View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_low_100 (Length: 239)

Name: NF2622_low_100
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_low_100
NF2622_low_100
[»] chr5 (3 HSPs)
chr5 (74-221)||(33685743-33685891)
chr5 (98-154)||(33001955-33002011)
chr5 (98-148)||(12190133-12190183)
[»] chr2 (4 HSPs)
chr2 (100-221)||(30486843-30486964)
chr2 (105-189)||(4058950-4059034)
chr2 (98-166)||(14573284-14573352)
chr2 (98-166)||(4479659-4479727)
[»] chr6 (3 HSPs)
chr6 (100-221)||(4311090-4311211)
chr6 (98-148)||(3543038-3543088)
chr6 (143-189)||(24126652-24126698)
[»] chr4 (5 HSPs)
chr4 (22-74)||(27579891-27579943)
chr4 (99-149)||(36451401-36451451)
chr4 (98-148)||(26611258-26611308)
chr4 (143-189)||(47376920-47376966)
chr4 (99-148)||(9939346-9939395)
[»] chr1 (4 HSPs)
chr1 (105-197)||(41882198-41882292)
chr1 (105-189)||(41884163-41884247)
chr1 (98-152)||(51974460-51974514)
chr1 (98-148)||(48972420-48972470)
[»] chr8 (2 HSPs)
chr8 (105-197)||(42915735-42915828)
chr8 (98-148)||(34992239-34992289)
[»] scaffold0332 (1 HSPs)
scaffold0332 (82-166)||(9215-9299)
[»] chr3 (3 HSPs)
chr3 (98-148)||(3971015-3971065)
chr3 (98-148)||(3998816-3998866)
chr3 (98-148)||(32490170-32490220)
[»] scaffold0041 (1 HSPs)
scaffold0041 (82-148)||(27550-27616)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 74 - 221
Target Start/End: Original strand, 33685743 - 33685891
Alignment:
Q  74 aggtggtgtttaatatggaacagtagagtttttt-ctcaccatggaaaagttgattatgtctattagatcaaatgaagaatatagtattatcatggactc 172  Q
    ||||||||||||||||||   ||||||||||||| | ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  33685743 aggtggtgtttaatatggggtagtagagtttttttcccaccatgtaaaagttgattatgtccattagattaaatgaagaatatagtattatcatggactc 33685842  T
Q  173 ttaacacaagatattttcacactcttctctcttctctatccccactctc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33685843 ttaacacaagatattttcacactcttctctcttctctatccccactctc 33685891  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 33001955 - 33002011
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatgaagaata 154  Q
    |||||| |||| |||||||||||||||||| ||||| ||||||| |||||| |||||    
T  33001955 agagttctttcccaccatggaaaagttgatcatgtccattagattaaatgaggaata 33002011  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 12190183 - 12190133
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatga 148  Q
    ||||||||||| |||||||| ||||||||| ||||| ||||||| ||||||    
T  12190183 agagttttttcccaccatgggaaagttgatcatgtccattagattaaatga 12190133  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 30486964 - 30486843
Alignment:
Q  100 agttttttctcaccatggaaaagttgattatgtctattagatcaaatgaagaatatagtattatcatggactcttaacacaagatattttcacactcttc 199  Q
    ||||||||| |||||||| ||||||||||||||  ||| ||||||||||||||||  ||| ||||||||||||||||||  |||||||||||||||||||    
T  30486964 agttttttcccaccatgggaaagttgattatgtgcattggatcaaatgaagaatacggtactatcatggactcttaacattagatattttcacactcttc 30486865  T
Q  200 tctcttctctatccccactctc 221  Q
    ||  | ||| ||||||||||||    
T  30486864 tcaatcctccatccccactctc 30486843  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 4059034 - 4058950
Alignment:
Q  105 tttctcaccatggaaaagttgattatgtctattagatcaaatgaagaatatagtattatcatggactcttaacacaagatatttt 189  Q
    |||| |||||| | |||||||||| || ||||||||||||||| |||| || |||||||||| |||| ||||||| |||||||||    
T  4059034 tttcccaccataggaaagttgattttgactattagatcaaatggagaacatggtattatcatagactgttaacactagatatttt 4058950  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 14573284 - 14573352
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatgaagaatatagtattatcat 166  Q
    ||||||||||| |||||||| ||||||||| ||||| ||||||| |||||| ||||||| | |||||||    
T  14573284 agagttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatatttttatcat 14573352  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 4479727 - 4479659
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatgaagaatatagtattatcat 166  Q
    |||||| ||||||||||||| |||||| || ||||| ||||||| |||||| ||| ||| | |||||||    
T  4479727 agagttctttctcaccatgggaaagttaatcatgtccattagattaaatgaggaacatattcttatcat 4479659  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 4311211 - 4311090
Alignment:
Q  100 agttttttctcaccatggaaaagttgattatgtctattagatcaaatgaagaatatagtattatcatggactcttaacacaagatattttcacactcttc 199  Q
    ||||||||| |||||||| | ||||||||||||  ||| |||||||||||||| |  ||| ||||||||||||||||||  |||||||||||||||||||    
T  4311211 agttttttcccaccatgggagagttgattatgtgcattggatcaaatgaagaacacggtactatcatggactcttaacattagatattttcacactcttc 4311112  T
Q  200 tctcttctctatccccactctc 221  Q
    ||  | ||| ||||||||||||    
T  4311111 tcaatcctccatccccactctc 4311090  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 3543088 - 3543038
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatga 148  Q
    ||||||||||| |||||||| ||||||||| ||||| ||||||| ||||||    
T  3543088 agagttttttcccaccatgggaaagttgatcatgtccattagattaaatga 3543038  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 24126698 - 24126652
Alignment:
Q  143 aaatgaagaatatagtattatcatggactcttaacacaagatatttt 189  Q
    |||||||||| || ||||||| ||||||||||||||| |||||||||    
T  24126698 aaatgaagaacatggtattattatggactcttaacactagatatttt 24126652  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 27579891 - 27579943
Alignment:
Q  22 agaactcacttatggcatctccaatgatgttaaaataagtgggattaatagaa 74  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  27579891 agaactcacttatggcatctccaatgatgttaaaataagcgggcttaatagaa 27579943  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 36451451 - 36451401
Alignment:
Q  99 gagttttttctcaccatggaaaagttgattatgtctattagatcaaatgaa 149  Q
    ||||| ||||||||||||||||||||||||||||| ||||||| |||||||    
T  36451451 gagttgtttctcaccatggaaaagttgattatgtccattagattaaatgaa 36451401  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 26611308 - 26611258
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatga 148  Q
    ||||||||||| |||||||| ||||||||| ||||| ||||||| ||||||    
T  26611308 agagttttttcccaccatgggaaagttgatcatgtccattagattaaatga 26611258  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 47376920 - 47376966
Alignment:
Q  143 aaatgaagaatatagtattatcatggactcttaacacaagatatttt 189  Q
    |||||||||| || ||||||| ||||||||||||||| |||||||||    
T  47376920 aaatgaagaacatggtattattatggactcttaacactagatatttt 47376966  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 9939395 - 9939346
Alignment:
Q  99 gagttttttctcaccatggaaaagttgattatgtctattagatcaaatga 148  Q
    ||||| |||| |||||||||||||||||| ||||| ||||||| ||||||    
T  9939395 gagttctttcccaccatggaaaagttgatcatgtccattagattaaatga 9939346  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 41882198 - 41882292
Alignment:
Q  105 tttctcaccatggaaaagttgattatgtctattagatcaaatgaagaatatagtattatcatggactctt-aacacaagata-ttttcacactct 197  Q
    |||| |||||| | |||||||||| || ||||| |||||||||||||| || |||||||||||||||||| ||||| ||||| ||||||||||||    
T  41882198 tttcccaccataggaaagttgattctgactattggatcaaatgaagaacatggtattatcatggactcttaaacactagatatttttcacactct 41882292  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 41884247 - 41884163
Alignment:
Q  105 tttctcaccatggaaaagttgattatgtctattagatcaaatgaagaatatagtattatcatggactcttaacacaagatatttt 189  Q
    |||| |||||| | |||||||||| |  |||||||||||||||||||| ||  |||||||||||||||||||||| ||| |||||    
T  41884247 tttcccaccataggaaagttgattctaactattagatcaaatgaagaacatgatattatcatggactcttaacactagaaatttt 41884163  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 51974460 - 51974514
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatgaagaa 152  Q
    |||||| |||| |||||||| ||||||||| ||||||||||||| ||||||||||    
T  51974460 agagttctttcccaccatgggaaagttgatcatgtctattagattaaatgaagaa 51974514  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 48972470 - 48972420
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatga 148  Q
    |||||| |||| |||||||||||||||||| ||||| ||||||| ||||||    
T  48972470 agagttctttcccaccatggaaaagttgatcatgtccattagattaaatga 48972420  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 42915828 - 42915735
Alignment:
Q  105 tttctcaccatggaaaagttgattatgtctattagatcaaatgaagaatatagtattatcatggactcttaacacaagata-ttttcacactct 197  Q
    |||| |||||| | |||||||||| || |||||| || |||| ||||| || |||||||||| |||||||||||| ||||| ||||||||||||    
T  42915828 tttcccaccataggaaagttgattttgactattaaattaaataaagaacatggtattatcatagactcttaacactagatatttttcacactct 42915735  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 34992289 - 34992239
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatga 148  Q
    ||||||||||| |||||||| ||||||||| ||||| ||||||| ||||||    
T  34992289 agagttttttcccaccatgggaaagttgatcatgtccattagattaaatga 34992239  T

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Target: scaffold0332 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 9299 - 9215
Alignment:
Q  82 tttaatatggaacagtagagttttttctcaccatggaaaagttgattatgtctattagatcaaatgaagaatatagtattatcat 166  Q
    |||||| ||||| || |||||||||| |||||||||||||||| || ||||| ||||||| |||||| ||| ||| | |||||||    
T  9299 tttaatttggaaaaggagagttttttttcaccatggaaaagttcatcatgtccattagattaaatgatgaacatattcttatcat 9215  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 3971015 - 3971065
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatga 148  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||| ||||||    
T  3971015 agagttttttttcaccatggaaaagttgatcatgtccattagattaaatga 3971065  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 3998866 - 3998816
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatga 148  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||| ||||||    
T  3998866 agagttttttttcaccatggaaaagttgatcatgtccattagattaaatga 3998816  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 32490220 - 32490170
Alignment:
Q  98 agagttttttctcaccatggaaaagttgattatgtctattagatcaaatga 148  Q
    |||||| |||| |||||||||||||||||| ||||| ||||||| ||||||    
T  32490220 agagttctttcccaccatggaaaagttgatcatgtccattagattaaatga 32490170  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 27616 - 27550
Alignment:
Q  82 tttaatatggaacagtagagttttttctcaccatggaaaagttgattatgtctattagatcaaatga 148  Q
    |||||| ||||| || ||||||||||| |||||||| ||||||||| || || ||||||| ||||||    
T  27616 tttaatttggaaaaggagagttttttcccaccatgggaaagttgatcatatccattagattaaatga 27550  T

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