View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_low_103 (Length: 238)
Name: NF2622_low_103
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_103 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 44 - 223
Target Start/End: Complemental strand, 6138375 - 6138198
Alignment:
| Q |
44 |
atattaatgatgacctaaattatgttatcatggatcaaaacatcaacggtgattacatttcttatttaagttatttctacaattttgataatattcattt |
143 |
Q |
| |
|
|||||||||||||| ||| || ||||| ||||||| |||||| || | ||||| |||| ||||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
6138375 |
atattaatgatgacataa--tacgttattatggatccaaacattaatgatgattccattcattatttaagttatttctacaatttttatgatatccattt |
6138278 |
T |
|
| Q |
144 |
gtcatgtcaagttcctaaaacccacttagatttcctcattgtagatgcttactttaaaccaatattgataatcacttaat |
223 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6138277 |
gtcacgtcaagttcctaaaacccacttagatttcctcattgtagatgcttactttaaaccaatattgataatcacttaat |
6138198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 13284039 - 13284216
Alignment:
| Q |
44 |
atattaatgatgacctaaattatgttatcatggatcaaaacatcaacggtgattacatttcttatttaagttatttctacaattttgataatattcattt |
143 |
Q |
| |
|
|||||||||||||| ||| || ||||| ||||||| |||||| || | ||||| |||| ||||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
13284039 |
atattaatgatgacataa--tacgttattatggatccaaacattaatgatgattccattctttatttaagttatttctacaatttttattatatccattt |
13284136 |
T |
|
| Q |
144 |
gtcatgtcaagttcctaaaacccacttagatttcctcattgtagatgcttactttaaaccaatattgataatcacttaat |
223 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13284137 |
gtcacgtcaagttcctaaaacccacttagatttcctcattgtagatgcttactttaaaccaatattgataatcacttaat |
13284216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 6163443 - 6163284
Alignment:
| Q |
64 |
tatgttatcatggatcaaaacatcaacggtgattacatttcttatttaagttatttctacaattttgataatattcatttgtcatgtcaagttcctaaaa |
163 |
Q |
| |
|
|||| ||| ||||| | ||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
6163443 |
tatgatattatggacccaaacatcaatggtgattccattccttatttaagttatttctacaatttttataatattcatttgtcacgtcaagttcctaaaa |
6163344 |
T |
|
| Q |
164 |
cccacttagatttcctcattgtagatgcttactttaaaccaatattgataatcacttaat |
223 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||| |
|
|
| T |
6163343 |
cccacttagatttcctcattggaaatgcttgctttaaaccaatattggtaatcacttaat |
6163284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 64 - 223
Target Start/End: Complemental strand, 6135636 - 6135477
Alignment:
| Q |
64 |
tatgttatcatggatcaaaacatcaacggtgattacatttcttatttaagttatttctacaattttgataatattcatttgtcatgtcaagttcctaaaa |
163 |
Q |
| |
|
|||| ||| ||||| | ||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
6135636 |
tatgatattatggacccaaacatcaatggtgattccattccttatttaagttatttctacaatttttataatattcatttgtcacctcaagttcttaaaa |
6135537 |
T |
|
| Q |
164 |
cccacttagatttcctcattgtagatgcttactttaaaccaatattgataatcacttaat |
223 |
Q |
| |
|
|||||||||||||| | |||| |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
6135536 |
cccacttagatttctttattggagattcttgctttaaaccaatattgataatcacttaat |
6135477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University