View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_low_108 (Length: 236)

Name: NF2622_low_108
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_low_108
NF2622_low_108
[»] chr4 (3 HSPs)
chr4 (22-204)||(56240890-56241066)
chr4 (83-178)||(23947210-23947305)
chr4 (24-73)||(23947405-23947454)
[»] chr1 (2 HSPs)
chr1 (83-178)||(16105639-16105734)
chr1 (24-73)||(16105486-16105535)
[»] chr8 (1 HSPs)
chr8 (83-169)||(16623900-16623986)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 56241066 - 56240890
Alignment:
Q  22 gaagaagaagctcttcaggagaaagtcccgtctaacaaataaacccattcttattcttgatagtaattgtaaagaaaaggtggacgaggttgtcagaatc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||||||||||||||| ||||||||||||||    
T  56241066 gaagaagaagctcttcaggagaaagtcccgtctaacaaataaatccattctt------gatagtaattgtaaagaaaaggtggacaaggttgtcagaatc 56240973  T
Q  122 aaacacaagcaggaggaagataagtcacaagtcacacttcattcatttcagttagtaatagtatactattcttcttactcaat 204  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56240972 aaacacaagcaggaggaagataaggcacaagtcacacttcattcatttcagttagtaatagtatactattcttcttactcaat 56240890  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 23947305 - 23947210
Alignment:
Q  83 agtaattgtaaagaaaaggtggacgaggttgtcagaatcaaacacaagcaggaggaagataagtcacaagtcacacttcattcatttcagttagta 178  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  23947305 agtaattgtaaagaaaaggtggaggaggttgtcagaatcaaacagaagcaggaggaagataaggcacaagtcagacttcattcatttcagttagta 23947210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 23947454 - 23947405
Alignment:
Q  24 agaagaagctcttcaggagaaagtcccgtctaacaaataaacccattctt 73  Q
    |||||||||  || ||||||||||| ||||||||||||||||||||||||    
T  23947454 agaagaagcaattaaggagaaagtctcgtctaacaaataaacccattctt 23947405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 16105639 - 16105734
Alignment:
Q  83 agtaattgtaaagaaaaggtggacgaggttgtcagaatcaaacacaagcaggaggaagataagtcacaagtcacacttcattcatttcagttagta 178  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  16105639 agtaattgtaaagaaaaggtggaggaggttgtcagaatcaaacagaagcaggaggaagataaggcacaagtcagacttcattcatttcagttagta 16105734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 16105486 - 16105535
Alignment:
Q  24 agaagaagctcttcaggagaaagtcccgtctaacaaataaacccattctt 73  Q
    |||||||||  |||||||||||||| ||||||||||||||||||||||||    
T  16105486 agaagaagcaattcaggagaaagtctcgtctaacaaataaacccattctt 16105535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 16623900 - 16623986
Alignment:
Q  83 agtaattgtaaagaaaaggtggacgaggttgtcagaatcaaacacaagcaggaggaagataagtcacaagtcacacttcattcattt 169  Q
    |||||||||| ||||||||||||  ||||||| ||||||||||| |||||||| ||||| ||| |  |||||| || ||||||||||    
T  16623900 agtaattgtacagaaaaggtggagaaggttgtgagaatcaaacagaagcaggaagaagacaaggcgaaagtcaaacatcattcattt 16623986  T

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