View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_110 (Length: 235)
Name: NF2622_low_110
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_110 |
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Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 4599892 - 4599997
Alignment:
| Q |
112 |
tcagagtctaagatatgtttattttaaaatggaatgattccaagtaatacaatttgagccttatcctcattgtgacaaagattgatcttgaatcctctca |
211 |
Q |
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| T |
4599892 |
tcagagtctaagatatgtttattttaaaatggaatgattccaagtaatacaatttgagccttatcctcattgtgacaaagattgatcttgaatcctctca |
4599991 |
T |
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| Q |
212 |
ataatc |
217 |
Q |
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|||||| |
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| T |
4599992 |
ataatc |
4599997 |
T |
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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4599781 - 4599848
Alignment:
| Q |
1 |
gaaaatgagaaagggatgagtcaatggtttaataattgagataaaagccaatgtcccttggatttgtg |
68 |
Q |
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||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4599781 |
gaaaatgagaaaggggtatgtcagtggtttaataattgagataaaagccaatgtcccttagatttgtg |
4599848 |
T |
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