View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_115 (Length: 232)
Name: NF2622_low_115
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_115 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 32158472 - 32158241
Alignment:
| Q |
1 |
ttatttcttacaaaattatgattcttgtttggttttcattcaaaccataataatgatttagaagaatttgatatacatgaatctagtttagatagattta |
100 |
Q |
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| T |
32158472 |
ttatttcttacaaaattatgattcttgtttgattttcattcaaaccataataatgatttagaagaatttgatatacatgaatctagtttagatagattta |
32158373 |
T |
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| Q |
101 |
attgtattaatgatttaggtgatgaattttgggtctgttaagaatgtgacttataccccactgggacataatattttgccaaaaacgattggtcttattg |
200 |
Q |
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| T |
32158372 |
attgtattaatgatttaggtgacgaattttggttctgttaagaatgtgacttataccccaccgggacataatattttaccaaaaacgattgttcttattg |
32158273 |
T |
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| Q |
201 |
gtaagattattgtcgaccatggttgatccagt |
232 |
Q |
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| T |
32158272 |
gtaagattattgtcgaccatggttgatccagt |
32158241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 201
Target Start/End: Original strand, 2821004 - 2821158
Alignment:
| Q |
52 |
aatgatttagaagaatttgatatacatgaatctagtttagatagatttaattgtattaatgatttaggtgatgaattttgggtc---tgttaagaatgtg |
148 |
Q |
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| T |
2821004 |
aatgatttagaataatttgatatacatgaatctagtttagatatatataattgtatggatgatttagctgacgaattttggttctgttgttaagaatgag |
2821103 |
T |
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| Q |
149 |
acttataccc--cactgggacataatattttgccaaaaacgattggtcttattgg |
201 |
Q |
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| T |
2821104 |
acttataccccacacgggggcataatattttgccaaaaacgattggtcttattgg |
2821158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 32111039 - 32110990
Alignment:
| Q |
52 |
aatgatttagaagaatttgatatacatgaatctagtttagatagatttaat |
102 |
Q |
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| T |
32111039 |
aatgatttggaagaatttgacatacatgaatctag-ttagatatatttaat |
32110990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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