View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_122 (Length: 216)
Name: NF2622_low_122
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_122 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 26009412 - 26009230
Alignment:
| Q |
18 |
aattaaaattcgaacttagtcaaaagtcgttgtcgataatagcttcaacatctacttcacaaataagtaagtatttgttatgattcccacgaatcataaa |
117 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26009412 |
aattaaaatttgaacttagtcaaaaatcgttgtcgataatagcttcaacatctacttcacaaataagtaagtatttgttatgcttcccacgaatcataaa |
26009313 |
T |
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| Q |
118 |
tcctttatatcatacttttagttactatcacttttaagaagtttaatcggttcggtttatgatatacaaatttgataaagaat |
200 |
Q |
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| T |
26009312 |
tcctttatatcatacttttagttactatcacttctaagaagtttaatcggatcggtttatgatatacaaatttgataaagaat |
26009230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 34987659 - 34987560
Alignment:
| Q |
30 |
aacttagtcaaaagtcgttgtcgataatagcttcaacatctacttcacaaataagtaagtatttgttatgattcccacgaatcataaatcctttatatca |
129 |
Q |
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| T |
34987659 |
aacttagtaaaaagtcattgtcaataatagcttaaacatctacttcacaaataagtaagcatctgttatgcttcccgtaaatcatacatcatttatatca |
34987560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 45050439 - 45050261
Alignment:
| Q |
18 |
aattaaaattcgaacttagtcaaaagtcgttgtcgataatagcttcaacatctacttcacaaataagtaagtatttgttatgattcccacgaatcataaa |
117 |
Q |
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| T |
45050439 |
aattaaaatttggatttggtaaaaagtcgttgtcgataatagcttcaacatctactttacaaataagtaagtatctgttatacttcccacgaatcataaa |
45050340 |
T |
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| Q |
118 |
tcctttatatcatacttttagttactatcacttttaagaagtttaatcggttcggtttatgatatacaaatttgataaa |
196 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||| ||||||||||||||| |
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| T |
45050339 |
tcctttatatcatacttttagttactataacttttaagaaatttaatcggattggtttatgatttacaaatttgataaa |
45050261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 30134173 - 30134355
Alignment:
| Q |
18 |
aattaaaattcgaacttagtcaaaagtcgttgtcgataatagcttcaacatctacttcacaaataagtaagtatttgttatgattcccacgaatcataaa |
117 |
Q |
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|||||||||| | |||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| |
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| T |
30134173 |
aattaaaatttggacttggtaaaaagtcattgtcgataatagcttcaacatctacttcacaaataagtaagtatttgttatgcttcacacaaatcataaa |
30134272 |
T |
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| Q |
118 |
tcctttatatcatacttttagttactatcacttttaagaagtttaatcggttcggtttatgatatacaaatttgataaagaat |
200 |
Q |
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| T |
30134273 |
tcctttgtatcatacttttagttactataacttttaagaaatttaataggatcggtatatgatttacaaatttgataaagaat |
30134355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 34029349 - 34029250
Alignment:
| Q |
30 |
aacttagtcaaaagtcgttgtcgataatagcttcaacatctacttcacaaataagtaagtatttgttatgattcccacgaatcataaatcctttatatca |
129 |
Q |
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|||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||| ||||||||| |
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| T |
34029349 |
aacttagtaaaaagtcattgtcaataatagcttaaacatctacttcacaaataagtaagcatctgttatgcttcccgtaaatcatacatcatttatatca |
34029250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 1059364 - 1059463
Alignment:
| Q |
30 |
aacttagtcaaaagtcgttgtcgataatagcttcaacatctacttcacaaataagtaagtatttgttatgattcccacgaatcataaatcctttatatca |
129 |
Q |
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|||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||| ||||||||| |
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| T |
1059364 |
aacttagtaaaaagtcattgtcaataatagcttaaacatctacttcacaaataagtaagcatctgttatgcttcccgtaaatcatacatcatttatatca |
1059463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 14938436 - 14938337
Alignment:
| Q |
30 |
aacttagtcaaaagtcgttgtcgataatagcttcaacatctacttcacaaataagtaagtatttgttatgattcccacgaatcataaatcctttatatca |
129 |
Q |
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||||| || ||||||| ||||| |||||||||| ||||||||||||||||||||||||| || ||||||| ||||| ||||||| ||| ||||||||| |
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| T |
14938436 |
aacttggtaaaaagtcattgtcaataatagcttaaacatctacttcacaaataagtaagcatctgttatgcttcccgtaaatcatacatcatttatatca |
14938337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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