View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_124 (Length: 215)
Name: NF2622_low_124
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_124 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 6290080 - 6290278
Alignment:
| Q |
1 |
attgtgttattctattaagtttcttacaatggagatgaactctatttataagctaatttctaacatagcatctctaacaaacttaacagctgtacaagct |
100 |
Q |
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| T |
6290080 |
attgtgttattcaattcagtttgttacaatggagatgaactctatttataagctaatttctaacatagcatctctaacaaacttaacagctgtacaagct |
6290179 |
T |
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| Q |
101 |
tatgtggcaagttagttagagttagaagtggttgcttgttcctcaagtaatcttccttcttctaccattcttaacaatcataacatacactatactttt |
199 |
Q |
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| T |
6290180 |
tatgtggcaagttagttagagttagaagtggttgcttgctcctcaagtaatcttccttcttcttccattcttaacaatcataacatacactatactttt |
6290278 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 4734115 - 4734034
Alignment:
| Q |
82 |
cttaacagctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgttcctcaagtaatcttccttcttct |
163 |
Q |
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| T |
4734115 |
cttaacagttgcacaagcttatgttgcaagtgagttagagttgtaagtggtagcttgttcctcatgtaatctctcttcttct |
4734034 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 11021770 - 11021816
Alignment:
| Q |
130 |
ggttgcttgttcctcaagtaatcttccttcttctaccattcttaaca |
176 |
Q |
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| T |
11021770 |
ggttacttgctcctcaagtaatcttccatcttcttccattcttaaca |
11021816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 176
Target Start/End: Original strand, 14932079 - 14932175
Alignment:
| Q |
84 |
taacagctgtacaagcttatgtggcaagttagttagagttagaagtggttgcttgttcctcaagta--atcttc--cttcttctaccattcttaaca |
176 |
Q |
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| T |
14932079 |
taacagttgtacatgcttatgtggcaagttagttcgagttatgggagataacttgttcctcaagtaatatcttcttcttcttcttccattcttaaca |
14932175 |
T |
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