View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_14 (Length: 535)
Name: NF2622_low_14
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 39538550 - 39538773
Alignment:
| Q |
20 |
ctacgctaccattggaaaccaatagatacatcagagtatattgctactgggtctcaatcagatgcaaagagatatgagtgcttgtagagaactctcttga |
119 |
Q |
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| T |
39538550 |
ctacgctaccattggaaaccaatagatacatcagagtatattgctactgggcctcaatcagatgcaaagagatatgagtgcttgaagagaactct--tga |
39538647 |
T |
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| Q |
120 |
attttaattccaggcccttagatgatgttgaatacgtttttgcttgtttcttgaaattgaaacaaaatccgtcatgattgcagctctgtgacggtgtggg |
219 |
Q |
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| T |
39538648 |
attttaattccaggcccttagatgatgttgaatacgtttttgcttgtttcttgaaattgaaacaaaatctgtcatgattgcagctctgtgatggtgtggg |
39538747 |
T |
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| Q |
220 |
cattgctcaactgttaaatggaacaa |
245 |
Q |
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| T |
39538748 |
cattgctcaactgttaaatggaacaa |
39538773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 296 - 526
Target Start/End: Original strand, 39538776 - 39539003
Alignment:
| Q |
296 |
aatggttattggtttgtcaaaaggttaccaccggagaagatttaaacnnnnnnnncctgttcaagtcgactgttggaaaaggaaaggccaaatttctttt |
395 |
Q |
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| T |
39538776 |
aatggttattggtttgtcaaaaggttaccaccggaga---tttaaacaaaaaaaacctgttcaagtcgactgttgcaaaaggaaaggccaaatttctttt |
39538872 |
T |
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| Q |
396 |
ctttgattttcttctgtctctgcatatatcctttatatgcaagagctgctatgtgtcaagcttgttacaaggcgaccaaacccttggaaccaggagtctc |
495 |
Q |
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| T |
39538873 |
ctttgattttcttctgtctctgcatatatcctttatatgcaagagctgctatgtgtcaagcttgttacaaggcgaccaaacccttggaaccaggagcctc |
39538972 |
T |
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| Q |
496 |
caagcttctagattcaatgcctaaacccttt |
526 |
Q |
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| T |
39538973 |
caagcttctagattcaatgcctaaacccttt |
39539003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 2555539 - 2555346
Alignment:
| Q |
25 |
ctaccattggaaaccaatagatacatcagagtatattgctactg-ggtctcaatcagatgcaaagagatatgagtgcttgtagagaactctcttgaattt |
123 |
Q |
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| T |
2555539 |
ctaccattagaaaccaatggatatatcagagtggattgctacggaggcctcaatcagatgcgaagagatgtgagtgtttgaagaaaactccc--gaattt |
2555442 |
T |
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| Q |
124 |
taattccaggcccttagatgatgttgaatacgtttttgcttgtttcttgaaattgaaacaaaatccgtcatgattgcagctctgtgacggtgtggg |
219 |
Q |
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| T |
2555441 |
caactccagaccctttattgatgttcaatattcttttgcttgtttcttgaaattgagatgaaatcttttgtgattgcagttctgtgatggtgtggg |
2555346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 469
Target Start/End: Complemental strand, 2553459 - 2553383
Alignment:
| Q |
393 |
tttctttgattttcttctgtctctgcatatatcctttatatgcaagagctgctatgtgtcaagcttgttacaaggcg |
469 |
Q |
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| T |
2553459 |
tttctttaattttcttccacctttgcagatatcctttgcatgcaaaagctgctctttgtcaagcttgttacaaggcg |
2553383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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