View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_16 (Length: 527)
Name: NF2622_low_16
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 36 - 498
Target Start/End: Original strand, 55336999 - 55337457
Alignment:
| Q |
36 |
caagcaataatgaaggaactgagtctttgaaggttaacccttcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttgggaa |
135 |
Q |
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| T |
55336999 |
caagcaataatgaaggaactgagtctttgaaggttaacccttcaaccagctttgcagtgggtatcctattcttaggaagtaaagaattgggtcttgggaa |
55337098 |
T |
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| Q |
136 |
atggattgaggcattcacatttcctctttttgaagacaagaaagaaaaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgta |
235 |
Q |
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| T |
55337099 |
atggattgaggcattcacattacctctttttgaagacaagaaagaaaaagaagaagttgaggtgtgcatggaagccatgaaaatgaaatgattgtacgta |
55337198 |
T |
|
| Q |
236 |
tgttaattatgttttgctttgtgtttagtgttagtgaggaaaggtttatatatatactatactattgtgacagggaggatgagtgcaacttgtaatgtta |
335 |
Q |
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| T |
55337199 |
tgttaattatgttttgatttgtgtttagtgttagtgaggaaaggtttatata-----tatactattgtgacagggaggatgagtgcaacttgtaatgtta |
55337293 |
T |
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| Q |
336 |
tagttttattcaattttttaagac-aagagttatgggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacaca |
434 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337294 |
tagttttattcaattttttagtacaaagagttatgggaggtattaaacaaataggttcttagatacctatggaccaaatgtaggaatatttgtatacaca |
55337393 |
T |
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| Q |
435 |
caataaaataacatgtttttagtattaaaaaatgaagctaatgagttcatgtcatgtgaaatta |
498 |
Q |
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| T |
55337394 |
caataaaataacatgtttttagtattaaaaaatgaagctaatgagttcatgtcatgtgaaatta |
55337457 |
T |
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