View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_17 (Length: 521)
Name: NF2622_low_17
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 9 - 504
Target Start/End: Original strand, 3583720 - 3584219
Alignment:
| Q |
9 |
gagtagcaaaggcctgatgcttcatcacagaaaccatcccggtctagtagtttctgtggtggagcactcaacaatggagatgatggggtgccataagcat |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3583720 |
gagtcgcaaaggcctgatgcttcatcacagaaaccatcccggtctagtagtttctgtggtggagcactcaacaatggagatgatggggtgccataagcat |
3583819 |
T |
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| Q |
109 |
ttcgtcgtttgtttccgcaacctaaactcactcttgtgcttactcctgttacaggatttgtgccactagcatacttgcataaagcctacataatcagtca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3583820 |
ttcgtcgtttgtttccgcaacctaaactcactcttgtgcttactcctgttacaggatttgtgccactagcatacttgcataaagcctacataatcagtca |
3583919 |
T |
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| Q |
209 |
aataatatatgtaattctcagtcataagctcaataaattctacgccaagaaagcattttgaccacattgaaacac----attctacgcaatcagaccatg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
3583920 |
aataatatatgtaattctcagtcataagctcaataaattctacgccaagaaagcattttgaccacattgaaacacattaattctacgcaatctgaccatg |
3584019 |
T |
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| Q |
305 |
accctatcatgtggaagctcgaatactaagatttgattagtgtttgaagcaatcagtggtcgtaccagtttttggggaaggtccaacacggcatcactaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3584020 |
accctatcatgtggaagctcgaatactaagatttgattagtgtttgaagcaatcagtggtcgtaccagtttttggggaaggtccaacacggcatcactaa |
3584119 |
T |
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| Q |
405 |
aatcagcgccttcaatgatggcgcctccaaggtcactccgtgtgaggactgttctagaaagaatggcattcgtaagattggcttcattaagaacctgtat |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3584120 |
aatcagcgccttcaatgatggcgcctccaaggtcactccgcgtgaggactgttctagaaagaatggcattcgtaagattggcttcattaagaacctgtat |
3584219 |
T |
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