View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_18 (Length: 499)
Name: NF2622_low_18
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 491
Target Start/End: Original strand, 39584470 - 39584943
Alignment:
| Q |
20 |
ccttgctttctttaacacttctggatgatttagcaaagcagacattgcccattctagagttgtagctgatgtttctgttcctccaaggatcatgaccttt |
119 |
Q |
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| T |
39584470 |
ccttgctttctttaacacttctggatgatttagcaaagcagacattgcccattctagagttgtagctgatgtttctgttcctccaaggatcatgaccttt |
39584569 |
T |
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| Q |
120 |
taagtcaaacaaactcaatttcaagatgagtgaaatcattggggtaatttcatcaaaatgacttctactttgattttatcgattattcactttattaagt |
219 |
Q |
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| T |
39584570 |
taagtcaaacaaactcaatttcaagatgagtgaaatcattgggataatttcatcaaaatgacttctactttgattttatcgattattcactttattaagt |
39584669 |
T |
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| Q |
220 |
gttgagtcaacaatcaagttttcaatgtttggatatacgtgtaaattttctaataatagagaaatnnnnnnncatactatattaaaatttactaataata |
319 |
Q |
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| T |
39584670 |
gttgagtcaacaatcaagttttcaatgtttggatatacgtgtaaattttctaataatagagaaataaaaaaacatactatattaaaatttactaataata |
39584769 |
T |
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| Q |
320 |
ggagggtatccaattagatcgggttcatattagaccacccctatttttacaattagaat--tgcatttgtatacaatctcatcttttcttttttgaaagg |
417 |
Q |
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| T |
39584770 |
ggagggtatccaattagatcgggttcatattagaccacccctatttttacagttagaattgtgcatttgtatacaatctcatcttttcttttttgaaagg |
39584869 |
T |
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| Q |
418 |
atacacgatctcatcttgaatactttgaaaccccaaaatttggttggaataactctaaggaccaatagaataat |
491 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39584870 |
atacacaatctcatcttgaatactttgaaaccccaaaatttggttggaataactctaaagaccaatagaataat |
39584943 |
T |
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