View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_low_26 (Length: 443)
Name: NF2622_low_26
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 23 - 275
Target Start/End: Complemental strand, 40829613 - 40829360
Alignment:
| Q |
23 |
aaggaaccacatttcaaggaagatgatcatgtatggataagaactacaaaaactgttgagaaactggagaatcaaaccaaaacgtgtggtaccacgtatc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40829613 |
aaggaaccacatttcaaggaagatgatcatgtatggataagaactataaaaactgttgagaaactggagaatcaaaccaaaacgtgtggtaccacgtatc |
40829514 |
T |
|
| Q |
123 |
catagcagcaag---aggattcacacattatcagtgtaaatagctgaacaaggtttatttctgtagagtacattgtgttagccattagaactggtgtcta |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40829513 |
catagcagcaagaggaggattcacacattatcagtgtaaatagctgaacaaggtttatttctgtagagtaca--gtgttagccattagaactggtgtcta |
40829416 |
T |
|
| Q |
220 |
cctataaatattgaacttgtnnnnnnnnttcaatgcacacagttaatcaagcgaac |
275 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40829415 |
cctataaatattgaacttgtaaaaaaaattcaatgcacacagttaatcaagcgaac |
40829360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 342 - 426
Target Start/End: Complemental strand, 40829294 - 40829210
Alignment:
| Q |
342 |
ggttcagtagctcaaacactcccaaatcaccacatttaacactatttggagtagctaaagaatccacatcggatgtacaaagtta |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40829294 |
ggttcagtagctcaaacactcccaaatcaccacatttaacactatttggagtagctaaagaatccacatcggatgaacaaagtta |
40829210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University