View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_low_28 (Length: 431)

Name: NF2622_low_28
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_low_28
NF2622_low_28
[»] chr8 (13 HSPs)
chr8 (17-321)||(9051161-9051460)
chr8 (354-415)||(9051103-9051164)
chr8 (255-358)||(32927961-32928064)
chr8 (297-367)||(32767447-32767519)
chr8 (255-330)||(32994153-32994230)
chr8 (262-336)||(37159396-37159470)
chr8 (273-315)||(43361292-43361334)
chr8 (255-348)||(10368044-10368137)
chr8 (297-330)||(10552936-10552969)
chr8 (254-315)||(13418736-13418797)
chr8 (273-358)||(35495059-35495144)
chr8 (295-411)||(36447701-36447815)
chr8 (295-367)||(16972017-16972089)
[»] chr7 (5 HSPs)
chr7 (233-355)||(40491650-40491772)
chr7 (284-357)||(45557435-45557508)
chr7 (298-358)||(40561714-40561774)
chr7 (255-329)||(42481803-42481877)
chr7 (296-361)||(12306789-12306854)
[»] chr6 (7 HSPs)
chr6 (255-336)||(765298-765379)
chr6 (255-359)||(46201-46305)
chr6 (254-354)||(1499973-1500073)
chr6 (282-351)||(25208702-25208771)
chr6 (262-358)||(3524994-3525090)
chr6 (303-367)||(34620946-34621010)
chr6 (303-367)||(34748383-34748447)
[»] chr1 (11 HSPs)
chr1 (296-367)||(35961428-35961499)
chr1 (237-358)||(5268288-5268410)
chr1 (231-336)||(43541583-43541688)
chr1 (254-311)||(11817229-11817286)
chr1 (295-359)||(34915134-34915198)
chr1 (307-358)||(213246-213297)
chr1 (255-358)||(7524182-7524285)
chr1 (254-309)||(49537187-49537242)
chr1 (255-309)||(47899371-47899425)
chr1 (295-336)||(23628732-23628772)
chr1 (298-330)||(32365144-32365176)
[»] chr4 (9 HSPs)
chr4 (231-315)||(24364081-24364165)
chr4 (296-370)||(33843768-33843842)
chr4 (254-352)||(43868211-43868309)
chr4 (298-336)||(54487248-54487286)
chr4 (255-352)||(22250301-22250398)
chr4 (248-309)||(34155811-34155872)
chr4 (295-336)||(53914919-53914959)
chr4 (270-358)||(1023846-1023934)
chr4 (274-330)||(46507969-46508025)
[»] chr2 (11 HSPs)
chr2 (273-367)||(15220792-15220886)
chr2 (297-348)||(3853932-3853983)
chr2 (297-412)||(28206692-28206807)
chr2 (233-330)||(11759750-11759847)
chr2 (254-311)||(38129425-38129482)
chr2 (284-367)||(4894099-4894182)
chr2 (296-358)||(16518847-16518909)
chr2 (284-358)||(40401585-40401659)
chr2 (254-335)||(43717417-43717498)
chr2 (262-346)||(6767756-6767840)
chr2 (231-339)||(12110915-12111023)
[»] chr5 (8 HSPs)
chr5 (263-355)||(117417-117509)
chr5 (262-330)||(14299423-14299491)
chr5 (262-336)||(29922991-29923065)
chr5 (295-336)||(7178827-7178867)
chr5 (233-370)||(14671082-14671218)
chr5 (262-367)||(35138943-35139048)
chr5 (280-336)||(10859769-10859825)
chr5 (296-360)||(34101840-34101904)
[»] chr3 (14 HSPs)
chr3 (255-358)||(30958105-30958209)
chr3 (255-358)||(30973917-30974021)
chr3 (255-367)||(35264324-35264436)
chr3 (231-330)||(24916581-24916680)
chr3 (231-336)||(53567967-53568072)
chr3 (233-335)||(42644298-42644401)
chr3 (248-315)||(42913166-42913233)
chr3 (262-336)||(48089610-48089684)
chr3 (279-352)||(1441344-1441417)
chr3 (231-312)||(27825268-27825349)
chr3 (281-350)||(41591292-41591361)
chr3 (300-356)||(7262885-7262941)
chr3 (297-337)||(23496351-23496391)
chr3 (248-288)||(49158659-49158699)
[»] scaffold0361 (1 HSPs)
scaffold0361 (273-367)||(14045-14139)
[»] scaffold0036 (1 HSPs)
scaffold0036 (254-367)||(863-975)
[»] scaffold0172 (1 HSPs)
scaffold0172 (231-339)||(15218-15326)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 9051460 - 9051161
Alignment:
Q  17 atgaataaggttgagatgtgtcgacttccacagtcttaatagagtctctttgatcggttgaagcccttcctctattctcccacggttttgtagccatcca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9051460 atgaataaggttgagatgtgtcgacttccacagtcttaatagagtctctttgatcggttgaagcccttcccctattctcccacggttttgtagccatcca 9051361  T
Q  117 tctatctagccattttggtctctcttcaagttcatcttcatttccaattgatgatgtcctgccatttctccaaatctgtgacattgtcaaagccaattag 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9051360 tctatctagccattttggtctctcttcaagttcatcttcatttccaattgatgatgtcctgccatttctccaaatctgtgactttgtcaaagccaattag 9051261  T
Q  217 ctaagaaaattgcttgtgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtac 316  Q
    |||||||||||||| |||||||||||||||      |||||||| |||||||||| |||||||| ||||||||   ||||||||||||||||||||||||    
T  9051260 ctaagaaaattgctcgtgtttggttatgcg-----gtaaattgattttgaatgaattgattgtgcaaaattggaaataactaaaagtgagttgaatgtac 9051166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 9051164 - 9051103
Alignment:
Q  354 ttgaatattaaattcgatataaaaaatcaatagttgaggcaaaaactccaaattctagtttc 415  Q
    ||||||||||| |||||||  ||| |||||| ||||||||||||||||||||||||||||||    
T  9051164 ttgaatattaagttcgataccaaatatcaattgttgaggcaaaaactccaaattctagtttc 9051103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 358
Target Start/End: Complemental strand, 32928064 - 32927961
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagt 354  Q
    |||||| |||||  ||| ||||| |||||||||| |||| ||||||| ||||||||| | | | |||||| ||||| ||||| | |||||||||||||||    
T  32928064 aattgattttgagggaattgattatgtaaaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttggatacattcatgtaaaagtgagt 32927965  T
Q  355 tgaa 358  Q
    ||||    
T  32927964 tgaa 32927961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 32767519 - 32767447
Alignment:
Q  297 taaaagtgagttgaatgtacattgatttatgtttcgatacttcca--tgtaaaagtgagttgaatattaaatt 367  Q
    ||||||||||||| ||||| |||||||||||||| ||||| | ||  ||||||||||||||||| | ||||||    
T  32767519 taaaagtgagttggatgtaaattgatttatgtttggatacattcatgtgtaaaagtgagttgaacaataaatt 32767447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 32994153 - 32994230
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtaca--ttgatttatgttt 330  Q
    |||||| |||||||||| ||||| |||||||||| ||||  || ||||||||||||| ||| |  |||||||||||||    
T  32994153 aattgattttgaatgaactgattatgtaaaattgattctggctgaaagtgagttgaaggtaaaatttgatttatgttt 32994230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 37159396 - 37159470
Alignment:
Q  262 tttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatac 336  Q
    |||||| ||| |||||||||||||||  || |||||||||| |||||||||||| | | || ||||||| |||||    
T  37159396 tttgaacgaattgattgtgtaaaattaattttaactaaaagggagttgaatgtaaagtaatatatgtttggatac 37159470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 315
Target Start/End: Original strand, 43361292 - 43361334
Alignment:
Q  273 tgattgtgtaaaattggttctaactaaaagtgagttgaatgta 315  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||    
T  43361292 tgattttgtataattggttctagctaaaagtgagttgaatgta 43361334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 10368137 - 10368044
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaa 348  Q
    |||||| ||||| |||| || || |||||||||| || | | ||||||||||||||| ||| | |||||| ||||| ||||| | |||||||||    
T  10368137 aattgattttgagtgaattgtttttgtaaaattgattttgagtaaaagtgagttgaaggtaaagtgatttgtgtttagatacattcatgtaaaa 10368044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 10552936 - 10552969
Alignment:
Q  297 taaaagtgagttgaatgtacattgatttatgttt 330  Q
    ||||||||||||||||||| ||||||||||||||    
T  10552936 taaaagtgagttgaatgtaaattgatttatgttt 10552969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 13418736 - 13418797
Alignment:
Q  254 aaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgta 315  Q
    ||||||| ||||| |||| |||||  ||| ||||| |||| |||||||||||||||||||||    
T  13418736 aaattgattttgagtgaattgattaggtagaattgattctgactaaaagtgagttgaatgta 13418797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 35495144 - 35495059
Alignment:
Q  273 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 358  Q
    ||||| |||||||||| |||| | |||||||| ||||||| || | |||||| ||||| ||||  | ||||||||||| |||||||    
T  35495144 tgattatgtaaaattgcttctgattaaaagtgggttgaatataaagtgatttgtgtttggatatattcatgtaaaagtaagttgaa 35495059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 411
Target Start/End: Original strand, 36447701 - 36447815
Alignment:
Q  295 actaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaattcgatataaaaaatcaatagttgaggca 394  Q
    |||||||||||||||||| || | |||||| ||||| ||||| |  ||||| || ||||||||||| |||||| |||   |||| ||||| || |||  |    
T  36447701 actaaaagtgagttgaatataaaatgatttgtgtttagatacatttatgtataactgagttgaataataaatttgattctaaaactcaattgtagag--a 36447798  T
Q  395 aaaactccaaattctag 411  Q
    ||| |||||||||||||    
T  36447799 aaagctccaaattctag 36447815  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 16972017 - 16972089
Alignment:
Q  295 actaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 367  Q
    ||||||||||||||||| ||| | |||||| |||||  |||| | ||||||||||||| ||||| | ||||||    
T  16972017 actaaaagtgagttgaaggtaaaatgatttgtgtttgaatacattcatgtaaaagtgatttgaacaataaatt 16972089  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 355
Target Start/End: Complemental strand, 40491772 - 40491650
Alignment:
Q  233 tgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcg 332  Q
    ||||||||| |||| ||| |  |||||| ||||| |||| ||||| |||||||||| || | ||||||||||||||||| ||| | |||||||| ||| |    
T  40491772 tgtttggttctgcggtgacaagaattgattttgagtgaattgattctgtaaaattgattttgactaaaagtgagttgaaggtaaagtgatttatttttgg 40491673  T
Q  333 atacttccatgtaaaagtgagtt 355  Q
    |||| | ||||||||||||||||    
T  40491672 atacattcatgtaaaagtgagtt 40491650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 357
Target Start/End: Complemental strand, 45557508 - 45557435
Alignment:
Q  284 aattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttga 357  Q
    ||||| |||| ||||||||||||||||| ||| | |||||| ||||| ||||| | ||||||||||||||||||    
T  45557508 aattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttggatacattcatgtaaaagtgagttga 45557435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 40561714 - 40561774
Alignment:
Q  298 aaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 358  Q
    |||| ||||||||| ||| | |||||||||||| ||||| | |||||||||||||||||||    
T  40561714 aaaattgagttgaaagtaaagtgatttatgtttggatacattcatgtaaaagtgagttgaa 40561774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 329
Target Start/End: Original strand, 42481803 - 42481877
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtt 329  Q
    |||||| ||| | |||| ||||| |||||||||| |||| |  |||||||||||||||||| | |||||||||||    
T  42481803 aattgattttaagtgaattgattatgtaaaattgattctgaaaaaaagtgagttgaatgtaaaatgatttatgtt 42481877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 361
Target Start/End: Complemental strand, 12306854 - 12306789
Alignment:
Q  296 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatat 361  Q
    ||||||||||||||||  || | |||||||||||| | ||  | ||||||||||||||||||||||    
T  12306854 ctaaaagtgagttgaagataaagtgatttatgtttggctagattcatgtaaaagtgagttgaatat 12306789  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 336
Target Start/End: Original strand, 765298 - 765379
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatac 336  Q
    |||||| ||||| ||||||||||||||||||||| |||||||||||||| ||||||| ||| | |||||| |||||| ||||    
T  765298 aattgattttgagtgaaatgattgtgtaaaattgattctaactaaaagtaagttgaaagtaaagtgatttgtgtttccatac 765379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 46201 - 46305
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagt 354  Q
    |||||| ||||| |||| ||||| |||||||||| |||||||||||||||||||| |  || | | |||| ||||| ||||| | | || ||||||||||    
T  46201 aattgattttgagtgaattgattctgtaaaattgattctaactaaaagtgagttgcaattaaagttatttgtgtttggatacattcgtggaaaagtgagt 46300  T
Q  355 tgaat 359  Q
    |||||    
T  46301 tgaat 46305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 354
Target Start/End: Complemental strand, 1500073 - 1499973
Alignment:
Q  254 aaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgag 353  Q
    ||||||| ||||| |||| ||||| |||||||||| || |  ||||||| ||||||| |||| ||||||||||||||  |||| |  |||||||||||||    
T  1500073 aaattgattttgactgaattgattttgtaaaattgattttggctaaaagcgagttgagtgtaaattgatttatgtttgaatacatttatgtaaaagtgag 1499974  T
Q  354 t 354  Q
    |    
T  1499973 t 1499973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 25208771 - 25208702
Alignment:
Q  282 aaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtg 351  Q
    ||||||| || ||| ||||||||||||||||||| | |||||||||||||||||  |  |||||||||||    
T  25208771 aaaattgattttaattaaaagtgagttgaatgtaaaatgatttatgtttcgatagatttatgtaaaagtg 25208702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 3525090 - 3524994
Alignment:
Q  262 tttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 358  Q
    |||||||||| ||||| |||||||||| || |  |||||||||||||||||| | | || ||||| |||  |||| |  |||||||||| |||||||    
T  3525090 tttgaatgaattgattatgtaaaattgattgtggctaaaagtgagttgaatgcaaactggtttatatttgaatacatttatgtaaaagtcagttgaa 3524994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 34621010 - 34620946
Alignment:
Q  303 tgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 367  Q
    ||||||||| ||| | |||||||||||| ||||| |  |||||||||||||||||| | ||||||    
T  34621010 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaatt 34620946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 367
Target Start/End: Complemental strand, 34748447 - 34748383
Alignment:
Q  303 tgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 367  Q
    ||||||||| ||| | |||||||||||| ||||| |  |||||||||||||||||| | ||||||    
T  34748447 tgagttgaaggtaaagtgatttatgtttggatacatttatgtaaaagtgagttgaaaaataaatt 34748383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 35961499 - 35961428
Alignment:
Q  296 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 367  Q
    |||||||||||||||| ||| | ||||||||||||| |||| | |||||||||||||||||||| |||||||    
T  35961499 ctaaaagtgagttgaaggtaaaatgatttatgtttctatacattcatgtaaaagtgagttgaattttaaatt 35961428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 358
Target Start/End: Complemental strand, 5268410 - 5268288
Alignment:
Q  237 tggttatgcgatgatataaattgactttgaa-tgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgata 335  Q
    |||||||||  ||| ||||||||| |||||| |||| ||||  |||||||||| ||||  |||||||||||||||||||| | |||||| |||||  |||    
T  5268410 tggttatgcagtgagataaattgattttgaaatgaactgatcttgtaaaattgattctgcctaaaagtgagttgaatgtaaagtgatttttgtttgaata 5268311  T
Q  336 cttccatgtaaaagtgagttgaa 358  Q
      | |||||||||||||||||||    
T  5268310 tattcatgtaaaagtgagttgaa 5268288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 336
Target Start/End: Original strand, 43541583 - 43541688
Alignment:
Q  231 tgtgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 330  Q
    |||||||||||||||| ||| | ||||||| | |||||||| ||||| ||||||||| ||||| |  ||||||||||||||  |  | ||||||||||||    
T  43541583 tgtgtttggttatgcggtgacaaaaattgattctgaatgaattgattctgtaaaattcgttctgatcaaaagtgagttgaaaatgaagtgatttatgttt 43541682  T
Q  331 cgatac 336  Q
     |||||    
T  43541683 ggatac 43541688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 11817229 - 11817286
Alignment:
Q  254 aaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaa 311  Q
    ||||||| ||||| |||| ||||| |||||||||| ||||||||||||| ||||||||    
T  11817229 aaattgagtttgagtgaattgattttgtaaaattgattctaactaaaagcgagttgaa 11817286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 359
Target Start/End: Complemental strand, 34915198 - 34915134
Alignment:
Q  295 actaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaat 359  Q
    ||||||||||||||| | ||| | ||||||||||||  |||| | ||||||||||||||||||||    
T  34915198 actaaaagtgagttgcaggtaaaatgatttatgtttgaatacattcatgtaaaagtgagttgaat 34915134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 213246 - 213297
Alignment:
Q  307 ttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 358  Q
    ||||||||| | |||||||||||| ||||| | |||||||||||||||||||    
T  213246 ttgaatgtaaagtgatttatgtttggatacatgcatgtaaaagtgagttgaa 213297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 358
Target Start/End: Complemental strand, 7524285 - 7524182
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagt 354  Q
    |||||| ||||  |||| ||||| | |||||||| ||||||||||||||||| | || ||| | |||||| ||||| || || |  ||||||||||||||    
T  7524285 aattgattttgggtgaactgattctataaaattgattctaactaaaagtgagctcaaggtaaagtgatttgtgtttggacacatttatgtaaaagtgagt 7524186  T
Q  355 tgaa 358  Q
    ||||    
T  7524185 tgaa 7524182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 309
Target Start/End: Complemental strand, 49537242 - 49537187
Alignment:
Q  254 aaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttg 309  Q
    |||||||||||||||||| ||||| |||||| ||| ||||| |||||| |||||||    
T  49537242 aaattgactttgaatgaattgattttgtaaagttgtttctagctaaaattgagttg 49537187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 47899425 - 47899371
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttg 309  Q
    |||||| ||||| |||| ||||| |||||||||| |||| |||||||||||||||    
T  47899425 aattgattttgagtgaattgattttgtaaaattgattcttactaaaagtgagttg 47899371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 23628732 - 23628772
Alignment:
Q  295 actaaaagtgagttgaatgtacattgatttatgtttcgatac 336  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  23628732 actaaaagtgagttgaatgta-attgatttatgtttggatac 23628772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 32365176 - 32365144
Alignment:
Q  298 aaaagtgagttgaatgtacattgatttatgttt 330  Q
    |||||||||||||||||| ||||||||||||||    
T  32365176 aaaagtgagttgaatgtaaattgatttatgttt 32365144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 315
Target Start/End: Original strand, 24364081 - 24364165
Alignment:
Q  231 tgtgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgta 315  Q
    ||||||||||| |  ||||| | ||||||| |||||||||| ||||| |||||||||| |||| ||||||||||| |||||||||    
T  24364081 tgtgtttggttttatgatgacaaaaattgattttgaatgaattgattatgtaaaattgattctcactaaaagtgatttgaatgta 24364165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 370
Target Start/End: Complemental strand, 33843842 - 33843768
Alignment:
Q  296 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaattcga 370  Q
    |||||||||||||| ||||| | |||||||||||| ||||  | ||||||| ||||||||||| | |||||||||    
T  33843842 ctaaaagtgagttggatgtaaagtgatttatgtttggatatattcatgtaatagtgagttgaacaataaattcga 33843768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 352
Target Start/End: Complemental strand, 43868309 - 43868211
Alignment:
Q  254 aaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtga 352  Q
    ||||||| |||||||||| ||||| |||||||||  |||||  ||||||| ||||||| ||| | |||||| | ||| ||||| |  ||||||||||||    
T  43868309 aaattgattttgaatgaattgattttgtaaaattaattctagttaaaagtaagttgaaagtaaagtgatttgtctttggatacatttatgtaaaagtga 43868211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 54487248 - 54487286
Alignment:
Q  298 aaaagtgagttgaatgtacattgatttatgtttcgatac 336  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  54487248 aaaagtgagttgaatgtaaattgatttatgtttggatac 54487286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 352
Target Start/End: Complemental strand, 22250398 - 22250301
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtga 352  Q
    |||||| |||||  ||| ||||| |||||||||| || | |||||||| |||||||||||  | |||||||  ||| ||||| | |||||||||||||    
T  22250398 aattgattttgagggaattgattctgtaaaattgattatgactaaaagcgagttgaatgtgaagtgatttacatttggatacattcatgtaaaagtga 22250301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 34155872 - 34155811
Alignment:
Q  248 tgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttg 309  Q
    ||||| ||||||  ||||| |||| | ||| |||||||||| ||||||||||||||||||||    
T  34155872 tgataaaaattgtttttgagtgaattaattatgtaaaattgattctaactaaaagtgagttg 34155811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 53914959 - 53914919
Alignment:
Q  295 actaaaagtgagttgaatgtacattgatttatgtttcgatac 336  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  53914959 actaaaagtgagttgaatgta-attgatttatgtttggatac 53914919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 358
Target Start/End: Original strand, 1023846 - 1023934
Alignment:
Q  270 aaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 358  Q
    |||||||| ||||||| || || || |||||||||||||||| ||| | |||||| ||||| ||||  |  |||| |||||||||||||    
T  1023846 aaatgattctgtaaaaatgattttagctaaaagtgagttgaaggtaaagtgatttttgtttggatatattgatgtgaaagtgagttgaa 1023934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 46507969 - 46508025
Alignment:
Q  274 gattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 330  Q
    |||| |||||||||| |||||| ||||||||||| |||| || | ||||||||||||    
T  46507969 gattttgtaaaattgattctaaataaaagtgagtggaatataaagtgatttatgttt 46508025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 15220792 - 15220886
Alignment:
Q  273 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 367  Q
    ||||| ||||| |||| || | || |||||||||||||||||| | |||||||||||| ||||| | ||||| ||||||||||||| | ||||||    
T  15220792 tgattttgtaatattgattatgacgaaaagtgagttgaatgtaaagtgatttatgtttggatacattcatgttaaagtgagttgaacaataaatt 15220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 3853983 - 3853932
Alignment:
Q  297 taaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaa 348  Q
    ||||||||||||||||||| |||||||||||||| ||||| | |||||||||    
T  3853983 taaaagtgagttgaatgtaaattgatttatgtttggatacattcatgtaaaa 3853932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 412
Target Start/End: Complemental strand, 28206807 - 28206692
Alignment:
Q  297 taaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaattcgatataaaaaatcaatagttgaggcaaa 396  Q
    |||| |||||||||||||| ||| |||||||||| | ||| | |||||||||||  |||||||| |||||| || |  |||||||||| ||  |||||||    
T  28206807 taaatgtgagttgaatgtaaattaatttatgtttaggtacattcatgtaaaagtttgttgaataataaatttgagactaaaaatcaatggtataggcaaa 28206708  T
Q  397 aactccaaattctagt 412  Q
     |||| ||||| ||||    
T  28206707 gactctaaattttagt 28206692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 11759750 - 11759847
Alignment:
Q  233 tgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 330  Q
    |||||||||||| | ||| | ||||||| ||||| |||| ||||| |||||||||| || | | ||||||||||||||| ||| |||| ||| |||||    
T  11759750 tgtttggttatgaggtgaaaaaaattgagtttgagtgaattgattttgtaaaattgattttgattaaaagtgagttgaaggtaaattggtttgtgttt 11759847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 38129425 - 38129482
Alignment:
Q  254 aaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaa 311  Q
    ||||||| |||||||||| ||||| |||||||| | ||||||||||||||||| ||||    
T  38129425 aaattgattttgaatgaattgattctgtaaaatggattctaactaaaagtgagatgaa 38129482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 367
Target Start/End: Original strand, 4894099 - 4894182
Alignment:
Q  284 aattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 367  Q
    ||||| ||||| |||||| | ||||||| ||| | |||||||||||| ||||| | ||| ||||||||| ||||||| ||||||    
T  4894099 aattgattctagctaaaattaagttgaaggtaaagtgatttatgtttagatacattcatttaaaagtgacttgaataataaatt 4894182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 358
Target Start/End: Complemental strand, 16518909 - 16518847
Alignment:
Q  296 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 358  Q
    |||||||||||||||  ||| | |||||| ||||| ||||| | |||||||||||||||||||    
T  16518909 ctaaaagtgagttgagggtaaaatgatttgtgtttggatacattcatgtaaaagtgagttgaa 16518847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 40401585 - 40401659
Alignment:
Q  284 aattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaa 358  Q
    |||||||||  ||||||| ||||||||| ||| | | |||||||||| ||||| | ||||||||||| |||||||    
T  40401585 aattggttcctactaaaaatgagttgaaggtagactaatttatgtttggatacattcatgtaaaagtcagttgaa 40401659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 43717498 - 43717417
Alignment:
Q  254 aaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgata 335  Q
    ||||||| | |||||||| | ||| |||||||||| ||||||||||| || ||| || |||| | |||||||||||| ||||    
T  43717498 aaattgattctgaatgaactaattttgtaaaattgattctaactaaatgttagtcgagtgtaaagtgatttatgtttggata 43717417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 6767840 - 6767756
Alignment:
Q  262 tttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaa 346  Q
    ||||||| || ||||| |||||||||| || | | ||||| ||||||||||||| | ||||||| ||||  |||| |||||||||    
T  6767840 tttgaataaactgattttgtaaaattgattgtgattaaaaatgagttgaatgtaaagtgatttacgtttatatacatccatgtaa 6767756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 339
Target Start/End: Complemental strand, 12111023 - 12110915
Alignment:
Q  231 tgtgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 330  Q
    ||||||||||| |||| |||   ||||||| |||||  ||| ||||| ||| |||||| || |   |||||||||||||||| || | ||||||||||||    
T  12111023 tgtgtttggttgtgcggtgacgaaaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgttt 12110924  T
Q  331 cgatacttc 339  Q
     ||||||||    
T  12110923 ggatacttc 12110915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 355
Target Start/End: Original strand, 117417 - 117509
Alignment:
Q  263 ttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagtt 355  Q
    |||| |||| ||||| ||||| |||| |||| |||| |||||||||||| ||| | ||||| |||||| ||||| || |||||||||||||||    
T  117417 ttgagtgaattgattatgtaatattgattctgactagaagtgagttgaaggtaaaatgattcatgtttggatacatctatgtaaaagtgagtt 117509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 330
Target Start/End: Complemental strand, 14299491 - 14299423
Alignment:
Q  262 tttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 330  Q
    ||||| |||| |||||||||||||||| |||||  ||||||||||||||| ||| | |||||| |||||    
T  14299491 tttgagtgaattgattgtgtaaaattgattctagataaaagtgagttgaaggtaaagtgatttgtgttt 14299423  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 336
Target Start/End: Complemental strand, 29923065 - 29922991
Alignment:
Q  262 tttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatac 336  Q
    |||||||||| ||||| |||||||||| || | |||| |||||||||||||||  | | |||||||||| |||||    
T  29923065 tttgaatgaattgattatgtaaaattgattttgactataagtgagttgaatgtgaagtaatttatgtttggatac 29922991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 336
Target Start/End: Complemental strand, 7178867 - 7178827
Alignment:
Q  295 actaaaagtgagttgaatgtacattgatttatgtttcgatac 336  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  7178867 actaaaagtgagttgaatgta-attgatttatgtttggatac 7178827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 370
Target Start/End: Complemental strand, 14671218 - 14671082
Alignment:
Q  233 tgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcg 332  Q
    ||||||||| |||  ||| | ||| ||| |||||||||| ||||| ||| |||||| || |  |||||||||| ||||||||  | | |||||||||| |    
T  14671218 tgtttggttttgcattgacaaaaaatgattttgaatgaattgattttgtgaaattgattatggctaaaagtgaattgaatgtgaagt-atttatgtttgg 14671120  T
Q  333 atacttccatgtaaaagtgagttgaatattaaattcga 370  Q
    || | | ||||||||||||||||| ||  |||||||||    
T  14671119 atgcattcatgtaaaagtgagttgtatgataaattcga 14671082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 367
Target Start/End: Original strand, 35138943 - 35139048
Alignment:
Q  262 tttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatat 361  Q
    ||||| |||| ||||| |||||| ||| ||||  |||||| ||||||||| ||| | |||||||||||  ||||| | ||| | ||||||||||||| |     
T  35138943 tttgagtgaattgattatgtaaacttgattctgtctaaaattgagttgaaggtaaaatgatttatgttcagatacattcatatgaaagtgagttgaacaa 35139042  T
Q  362 taaatt 367  Q
    ||||||    
T  35139043 taaatt 35139048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 10859769 - 10859825
Alignment:
Q  280 gtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatac 336  Q
    ||||||||| || ||||||||||| ||||||||| | | |||||||||||| |||||    
T  10859769 gtaaaattgattataactaaaagtaagttgaatgcaaagtgatttatgtttagatac 10859825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 34101904 - 34101840
Alignment:
Q  296 ctaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaata 360  Q
    ||||||||||||||||| || | |||||||||||| || || | |||| ||| ||||||||||||    
T  34101904 ctaaaagtgagttgaatctatagtgatttatgtttggaaacgttcatgcaaatgtgagttgaata 34101840  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 358
Target Start/End: Complemental strand, 30958209 - 30958105
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtaca-ttgatttatgtttcgatacttccatgtaaaagtgag 353  Q
    |||||| |||||||||| ||||| |||||||||| || |  ||||| |||||||||||||| | || |||||||||| ||||  | |||||||||||||     
T  30958209 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaa 30958110  T
Q  354 ttgaa 358  Q
    |||||    
T  30958109 ttgaa 30958105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 358
Target Start/End: Complemental strand, 30974021 - 30973917
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtaca-ttgatttatgtttcgatacttccatgtaaaagtgag 353  Q
    |||||| |||||||||| ||||| |||||||||| || |  ||||| |||||||||||||| | || |||||||||| ||||  | |||||||||||||     
T  30974021 aattgattttgaatgaattgattttgtaaaattgattttggctaaatgtgagttgaatgtaaagtttatttatgtttggatatattcatgtaaaagtgaa 30973922  T
Q  354 ttgaa 358  Q
    |||||    
T  30973921 ttgaa 30973917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 367
Target Start/End: Original strand, 35264324 - 35264436
Alignment:
Q  255 aattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagt 354  Q
    |||||| ||||| |||| ||||| |||||||||| || |||| |||||||||||||| ||| | ||| |||||||| | ||| | ||||||||| ||| |    
T  35264324 aattgattttgagtgaattgattctgtaaaattgattgtaaccaaaagtgagttgaaagtaaagtgagttatgtttgggtacattcatgtaaaaatgact 35264423  T
Q  355 tgaatattaaatt 367  Q
    |||| | ||||||    
T  35264424 tgaacaataaatt 35264436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 24916680 - 24916581
Alignment:
Q  231 tgtgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 330  Q
    ||||||||||| |||| ||| | ||||| | |||||| ||  ||||| |||||||||| |||   |||||||||||||||||||| | ||||||||||||    
T  24916680 tgtgtttggttctgcggtgacaaaaattaattttgaacgagttgattttgtaaaattgattcaggctaaaagtgagttgaatgtaaaatgatttatgttt 24916581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 336
Target Start/End: Complemental strand, 53568072 - 53567967
Alignment:
Q  231 tgtgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 330  Q
    |||||||| ||||||||||||  ||||||| ||||| |||| ||||| |  ||||||| || | | ||||||||||||||||| | | | ||||||||||    
T  53568072 tgtgtttgattatgcgatgatgaaaattgattttgagtgaattgattttacaaaattgattttgattaaaagtgagttgaatgaaaagtaatttatgttt 53567973  T
Q  331 cgatac 336  Q
     |||||    
T  53567972 ggatac 53567967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 42644401 - 42644298
Alignment:
Q  233 tgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaa-ttggttctaactaaaagtgagttgaatgtacattgatttatgtttc 331  Q
    |||||||||||||| ||||   |||||| ||||| |||| ||||| | ||||| ||| || ||  ||||||||||||||||||| | ||||||||||||     
T  42644401 tgtttggttatgcggtgatgagaattgattttgagtgaattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttg 42644302  T
Q  332 gata 335  Q
    ||||    
T  42644301 gata 42644298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 42913233 - 42913166
Alignment:
Q  248 tgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgta 315  Q
    ||||| ||||||| ||||| |||| ||||||| |||||||  |||||||||||||||| || ||||||    
T  42913233 tgataaaaattgattttgagtgaattgattgtataaaattaattctaactaaaagtgaattaaatgta 42913166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 48089610 - 48089684
Alignment:
Q  262 tttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatac 336  Q
    ||||||| || ||||| | |||||||| |||||  ||||||||||||||||||| | ||||||||| || |||||    
T  48089610 tttgaataaattgattctttaaaattgattctagttaaaagtgagttgaatgtaaaatgatttatgattggatac 48089684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 352
Target Start/End: Original strand, 1441344 - 1441417
Alignment:
Q  279 tgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtga 352  Q
    |||||||||| ||||  |||||||||||||||| ||| | |||||| ||||| ||||| | || ||||||||||    
T  1441344 tgtaaaattgattctgtctaaaagtgagttgaacgtaaagtgatttgtgtttagatacattcacgtaaaagtga 1441417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 27825268 - 27825349
Alignment:
Q  231 tgtgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaat 312  Q
    |||||||||||||||| | | | ||||||| |||||||||| | ||| | |||||||| || | ||||||||| ||||||||    
T  27825268 tgtgtttggttatgcggtaacacaaattgattttgaatgaatttattttataaaattgattatgactaaaagttagttgaat 27825349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 41591292 - 41591361
Alignment:
Q  281 taaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagt 350  Q
    |||||| ||||||  |||||| |||||||||| || | |||||||||||| ||||| | |||||||||||    
T  41591292 taaaataggttcttgctaaaaatgagttgaatttaaagtgatttatgtttggatacattcatgtaaaagt 41591361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 7262941 - 7262885
Alignment:
Q  300 aagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttg 356  Q
    |||||||||||| ||| | || ||||||||| ||||| | |||||||||||||||||    
T  7262941 aagtgagttgaaggtataatgttttatgttttgatacattcatgtaaaagtgagttg 7262885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 23496391 - 23496351
Alignment:
Q  297 taaaagtgagttgaatgtacattgatttatgtttcgatact 337  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  23496391 taaaagtgagttgaatgtgaattgatttatgtttggatact 23496351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 49158699 - 49158659
Alignment:
Q  248 tgatataaattgactttgaatgaaatgattgtgtaaaattg 288  Q
    ||||||||||||| |||||||||| ||||| ||||||||||    
T  49158699 tgatataaattgattttgaatgaattgattttgtaaaattg 49158659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 367
Target Start/End: Original strand, 14045 - 14139
Alignment:
Q  273 tgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgagttgaatattaaatt 367  Q
    ||||| |||||||||| ||||  ||| || ||||||||| ||| | |||||||||||| ||||| | ||||| ||||||||||||| | ||||||    
T  14045 tgattttgtaaaattgattcttgctacaattgagttgaaggtaaagtgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatt 14139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 367
Target Start/End: Original strand, 863 - 975
Alignment:
Q  254 aaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgtttcgatacttccatgtaaaagtgag 353  Q
    ||||||| ||| |||||| ||||| | |||||||| ||| |||||||| | |||||||| || | |||||||||| | || || | ||||||||||| ||    
T  863 aaattgattttaaatgaattgattctctaaaattgattccaactaaaaataagttgaattta-agtgatttatgtgtagaaacattcatgtaaaagtaag 961  T
Q  354 ttgaatattaaatt 367  Q
    ||||| | ||||||    
T  962 ttgaacaataaatt 975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 339
Target Start/End: Original strand, 15218 - 15326
Alignment:
Q  231 tgtgtttggttatgcgatgatataaattgactttgaatgaaatgattgtgtaaaattggttctaactaaaagtgagttgaatgtacattgatttatgttt 330  Q
    ||||||||||| |||| |||   ||||||| |||||  ||| ||||| ||| |||||| || |   |||||||||||||||| || | ||||||||||||    
T  15218 tgtgtttggttgtgcggtgacgaaaattgattttgatagaattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgttt 15317  T
Q  331 cgatacttc 339  Q
     ||||||||    
T  15318 ggatacttc 15326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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