View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_31 (Length: 428)
Name: NF2622_low_31
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_31 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Original strand, 7422899 - 7423296
Alignment:
| Q |
16 |
atccatgcaacaaattagccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422899 |
atccatgcaacaaattagccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcata |
7422998 |
T |
|
| Q |
116 |
atcatgtccttttacatctatattattaccaataaacctctctggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaagta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7422999 |
atcatgtccttttacatctatattattaccaataaacctctcaggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaagta |
7423098 |
T |
|
| Q |
216 |
ttgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423099 |
ttgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcc |
7423198 |
T |
|
| Q |
316 |
tcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctcc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7423199 |
tcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctcc |
7423296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 412
Target Start/End: Original strand, 7429305 - 7429704
Alignment:
| Q |
16 |
atccatgcaacaaattagccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcata |
115 |
Q |
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||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| || ||| |
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| T |
7429305 |
atccatgcaacaagttagccaaacttgattgaaccaccttaagaccaagaggataaccaggacacatccttctaccagcacctaatggcaacatcttata |
7429404 |
T |
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| Q |
116 |
atcatgtccttttac---atctatattattaccaataaacctctctggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaa |
212 |
Q |
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|||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||||||| |||||| || || ||||||||||||||||||| |
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| T |
7429405 |
atcatgtccttttattatatctatatcattgttaataaacctctctggtataaattcatatggattatcccaactatcagaatctcttccaattgtccaa |
7429504 |
T |
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| Q |
213 |
gtattgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaa |
312 |
Q |
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|||||||||||||| | |||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| ||||||||| |
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| T |
7429505 |
gtattgacaagaatcatagtcccttttggtatatcataaccatcaacattgcaattctcagtagcttctcttggcactaacattggtgtcacaggatgaa |
7429604 |
T |
|
| Q |
313 |
gcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |
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| T |
7429605 |
gcctcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctctccctattactctatctagttcctc |
7429704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 412
Target Start/End: Original strand, 7415240 - 7415636
Alignment:
| Q |
16 |
atccatgcaacaaattagccaaacttgattgtatcaccttaagaccaagaggataaccaggacacatccttctaccagtaccaaatggcaacaactcata |
115 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| | |
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| T |
7415240 |
atccatgcaacaaattagccaaacttgtttgaatcaccttaataccaagagggtaaccaggacacatccttctaccagcaccaaatggtaacaactcaaa |
7415339 |
T |
|
| Q |
116 |
atcatgtccttttacatctatattattaccaataaacctctctggtataaactcatatggattgtcccaaacattaggatctcttccaattgtccaagta |
215 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||| || ||||| ||||||||||| |||||||| | || ||||||| |||||||||||||| |
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| T |
7415340 |
atcatgtccttttacatctatatctttaccaagaaacctctcaggcataaattcatatggattctcccaaacctcagaatctcttgcaattgtccaagta |
7415439 |
T |
|
| Q |
216 |
ttgacaagaattagagtcccttttgggatatcataaccatcaacattgcaatcctcactagcttctcttggcactaacaatggtgctgcaggatgaagcc |
315 |
Q |
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|||||||||| || ||||||||| || ||||| ||||||||||| ||||||||||| |||||||||| ||||||||| |||||||| | ||||| |||| |
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| T |
7415440 |
ttgacaagaactatagtccctttgggaatatcgtaaccatcaactttgcaatcctctctagcttctcgtggcactaaaaatggtgccacgggatgtagcc |
7415539 |
T |
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| Q |
316 |
tcattgtttctttagcaattgcaaaaacataaggtaaattgacaatgtctttctcttcaacccatctatctcttcctattactttgtctagttcctc |
412 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| | ||||| ||||| |
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| T |
7415540 |
tcattgtttctttagcaattgcgtaaacataaggtaaattcgcaatgtctttctcttcaacccatctatcttttcctatcactctatctagctcctc |
7415636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 19836 - 19799
Alignment:
| Q |
147 |
ataaacctctctggtataaactcatatggattgtccca |
184 |
Q |
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||||||||||||||| |||||||||||||||| ||||| |
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| T |
19836 |
ataaacctctctggtttaaactcatatggattctccca |
19799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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