View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_low_32 (Length: 426)
Name: NF2622_low_32
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 181 - 411
Target Start/End: Original strand, 42306895 - 42307124
Alignment:
| Q |
181 |
tgaactcccctctaacatgctcttgaactctgctttcaaacgtagtcataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcaca |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42306895 |
tgaactcccctctaacatgctcttgaactccgctttcaaacgtggtcataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcaca |
42306994 |
T |
|
| Q |
281 |
gtaagtgttgcttcacataacaagagtctactagtttcctcaggtgacccaacaacctggcaaagacattcacattaatacacaacaaataggattaata |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42306995 |
gtaagtgttgcttcacataacaagagtctactagtttcctcaggtgacccaacaacctggcaaagacattcacattaatacacaacaaatagg-ttaata |
42307093 |
T |
|
| Q |
381 |
tgaacgacattcaaattaatagacagaattt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
42307094 |
tgaacgacattcaaattaatagacagaattt |
42307124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 42306692 - 42306901
Alignment:
| Q |
1 |
tcaagaagaaagaatcacaaaggagattagaattttaatagaataccatataataaaggttacaaagattatatataataaacttaaaaggactagatta |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42306692 |
tcaagaagagagaataacaaaggagattagaattttaacagaataccatataataaaggttacaaagattatatataataaacttaaaaggactagatta |
42306791 |
T |
|
| Q |
101 |
ctaatcatccctcaaagtcacgatgcattaacagcgatagcctaaaaggtttgtcaactacgacaccaaaacgtactcgatgaactcccctctaacatgc |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42306792 |
ctaatcatccctcaaagtcacaatgcattaacagcgatagcctaaaaggtttgtcaactacgatgccaaaacgtactcgatgaactcccctctaacatgc |
42306891 |
T |
|
| Q |
201 |
tcttgaactc |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
42306892 |
tcttgaactc |
42306901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 226 - 374
Target Start/End: Complemental strand, 51571484 - 51571336
Alignment:
| Q |
226 |
tcataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcacagtaagtgttgcttcacataacaagagtctactagtttcctcaggt |
325 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51571484 |
tcataacttgtaaactggatcaattccaaggagatagaagcaatgtctcatcacaacaagtgttgcttcacataacaagagtctactagtttcctcaggc |
51571385 |
T |
|
| Q |
326 |
gacccaacaacctggcaaagacattcacattaatacacaacaaatagga |
374 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||||||| ||||||||| |
|
|
| T |
51571384 |
gacccaacaacctgacaaaggcattcaaattaatacacagcaaatagga |
51571336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 228 - 374
Target Start/End: Original strand, 47971560 - 47971706
Alignment:
| Q |
228 |
ataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcacagtaagtgttgcttcacataacaagagtctactagtttcctcaggtga |
327 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
47971560 |
ataacttgtaaactggatcaattccaaggagatagaagcaatgcctcatcacaataagtgttgcttcacataacaagagtctactagtttcctccggcga |
47971659 |
T |
|
| Q |
328 |
cccaacaacctggcaaagacattcacattaatacacaacaaatagga |
374 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
47971660 |
cccaacaacctgacaaaggcattcacattaatacacagcaaatagga |
47971706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 345
Target Start/End: Complemental strand, 34035367 - 34035250
Alignment:
| Q |
228 |
ataacttgtcaactggttcaattccaaggagatagaagcactgtctcatcacagtaagtgttgcttcacataacaagagtctactagtttcctcaggtga |
327 |
Q |
| |
|
|||| |||| ||| |||||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
34035367 |
ataatttgtaaacaggttcaattccaaggagataaaagcactttctcatcacaactgcagttgcttcacatagcaaaagtctactagtttcctcaggtgt |
34035268 |
T |
|
| Q |
328 |
cccaacaacctggcaaag |
345 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
34035267 |
tcctacaacctgccaaag |
34035250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University