View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_low_33 (Length: 411)
Name: NF2622_low_33
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 41487666 - 41487290
Alignment:
| Q |
1 |
accaggctcacctcagtaatcaaaacccctgcccctcccctcctaggcaacatcaagctaattgttaaagaacagttcaaactaactcaagactataaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41487666 |
accaggctcacctcagtaatcaaaacccctgcccctcccctcctaggcaacatcaagctaattgttaaagaacagttcaaactaactcaagactataaat |
41487567 |
T |
|
| Q |
101 |
ggttttttattgtatggaaaatgctttatttttaggctcaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41487566 |
ggttttttattgtatggaaaatgctttatttttaggctcaggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactac |
41487467 |
T |
|
| Q |
201 |
aacaggagactattgataccaccaactcgtctcgattactctttaacatatattttagtaatcaacaatttcaaaaaacttcaactcgttacaaagtttt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41487466 |
aacaggagacgattgataccaccaactcgtctcgattactttttaacatatattttagtaatcaacaatttcaaaaaacttcaactcgttacaaagtttt |
41487367 |
T |
|
| Q |
301 |
aaaccgaaagtcacaagcattatctgctaaaaaagtgctcctacatgataagtaatgatatataacaaccataattt |
377 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41487366 |
aaaccttaagtcacaagcattatctgctaaaaaagtgctcctacatgataagtaatgatatataacaaccataattt |
41487290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 57 - 373
Target Start/End: Complemental strand, 41486743 - 41486426
Alignment:
| Q |
57 |
gctaattgtta-aagaacagttcaaactaactcaagactataaatggttttttattgtatggaaa-------atgctttatttttaggctcaggtacgat |
148 |
Q |
| |
|
||||||||||| || ||||||||||||||| |||||| ||||| | |||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
41486743 |
gctaattgttataaaaacagttcaaactaaatcaagaatataac-gcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgat |
41486645 |
T |
|
| Q |
149 |
ttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacagg-agactattgataccaccaactcgtctcgattactctttaac |
247 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||| ||||| | || ||| |
|
|
| T |
41486644 |
ttcaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaattgataccacctactcgtcgtgattaattttcaac |
41486553 |
T |
|
| Q |
248 |
atatattttagtaatcaacaatttc-aaaaaacttcaactcgttacaaagttttaaaccgaaagtcacaagcattatctgctaaaaaagtgctcctacat |
346 |
Q |
| |
|
||| |||| | |||||||||||||| ||||||||||||||| || ||||||||||| | ||||||| | ||||||||||||||| ||| ||||||||| |
|
|
| T |
41486552 |
ataaatttcaataatcaacaatttccaaaaaacttcaactcctttcaaagttttaacacaaaagtcatacacattatctgctaaaagagtactcctacat |
41486453 |
T |
|
| Q |
347 |
gataagtaatgatatataacaaccata |
373 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
41486452 |
gataagtaactatatataacaaccata |
41486426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 152 - 313
Target Start/End: Complemental strand, 40753830 - 40753662
Alignment:
| Q |
152 |
aaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacagg-agactattgataccacca------actcgtctcgattactcttt |
244 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| | |||| ||| |||| ||||||| |||| |||| || ||||||| ||| |
|
|
| T |
40753830 |
aaatgaatttaacttaaatgtttcgagacaaaaatttaaaccaggcaacaaaagggagacgattgatagtaccacctaccactcaccttgattacttttt |
40753731 |
T |
|
| Q |
245 |
aacatatattttagtaatcaacaatttcaaaaaacttcaactcgttacaaagttttaaaccgaaagtca |
313 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||| ||| | ||||||||| || ||||||| |
|
|
| T |
40753730 |
gacatatgtttcagtaatcaacaatttcaaaaaacttcaacttgtttcgaagttttaacccaaaagtca |
40753662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 41479507 - 41479424
Alignment:
| Q |
139 |
caggtacgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacaggagactattgataccac |
222 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
41479507 |
caggtatgatttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccaaactacaaagagagacaattgataccac |
41479424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University