View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_35 (Length: 408)
Name: NF2622_low_35
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 10 - 398
Target Start/End: Complemental strand, 10969584 - 10969196
Alignment:
| Q |
10 |
tcatcaataataacatgccaaagcttcaactcttcttcaattgtttcctccttaagcaattttttcaagttcatccaacaaaaaagtcccgcattacttg |
109 |
Q |
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| T |
10969584 |
tcattaataataacatgccaaagcttcaactcttcttcaattgtttcctccttaagcaattttttcaagttcatccaacaaaaaagtcccgcattacttg |
10969485 |
T |
|
| Q |
110 |
gaaatcgactaatttcaacctcttcgagtccctttgtaaatttgtcatgcctttttaacaaccttctcgaactctctaaaagaaacttgtcaacaaattt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10969484 |
gaaatcgactaatttcaacctcttcgagtccctttgtaaatttgtcatgcctttttaacaaccttctcgaactctctaaaagaaacttgtcaacaaattt |
10969385 |
T |
|
| Q |
210 |
ttcatcagaaagcattgaagcaagcatgtattgagtttgagatgagactaatccaaagcttgacattttccttccacaattcaccacttgatcattgtat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10969384 |
ttcatcagaaagcattgaagcaagcatgtattgagtttgagatgagactaatccaaagcttgacattttccttccacaattcaccacttgatcattgtat |
10969285 |
T |
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| Q |
310 |
gaataaactatcccaaccctaaaaccaggaaaccctaagtctttcgataaactataaataacatgaatgagatcaaggttgcacttcat |
398 |
Q |
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| T |
10969284 |
gaataaactatcccaaccctaaaaccaggaaaccctaagtctttcgataaactataaataacatgaatgagatcaaggttgcacttcat |
10969196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 112 - 359
Target Start/End: Original strand, 7754464 - 7754706
Alignment:
| Q |
112 |
aatcgactaatttcaacctcttcgagtccctttgtaaatttgtcatgcctttttaacaaccttctcgaactctctaaaagaaacttgtcaacaaattttt |
211 |
Q |
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| T |
7754464 |
aatcaactaatttcaacctcttcaagtcc-tctgtaaatttttcatgcctttttaacaacgttcttgagctctctaaactaaatgtgtcaacaaattttt |
7754562 |
T |
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| Q |
212 |
catcagaaagcattgaa---gcaagcatgtattgagtttgagatgagactaatccaaagcttgacattttccttccacaattcaccacttgatcattgta |
308 |
Q |
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||| | ||||||||||| ||| ||| | |||||||| |||||||||||| ||||||||||||||| |||||||||| | ||||| || || |
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| T |
7754563 |
cattacaaagcattgaaggcgcagacatatgttgagttt-------gactaatccaaaacttgacattttccttacacaattcactgcatgatcttttta |
7754655 |
T |
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| Q |
309 |
tgaataaactatcccaaccctaaaaccaggaaaccctaagtctttcgataa |
359 |
Q |
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| T |
7754656 |
tgaataaactattccaaccctaaaattagggaaccctaagtcctttgataa |
7754706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 383
Target Start/End: Original strand, 29963865 - 29963998
Alignment:
| Q |
250 |
gatgagactaatccaaagcttgacattttccttccacaattcaccacttgatcattgtatgaataaactatcccaaccctaaaaccaggaaaccctaagt |
349 |
Q |
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|||||||||||||||||||| |||||||| || || || ||||| |||| ||| ||||| |||||||| | ||||| |||||||| |||| || | || |
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| T |
29963865 |
gatgagactaatccaaagctcgacatttttctaccgcagttcacaacttcatcgttgtacgaataaaccaaaccaactctaaaacccggaagacccatgt |
29963964 |
T |
|
| Q |
350 |
ctttcgataaactataaataacatgaatgagatc |
383 |
Q |
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|||| ||||||||||| |||| ||||||||||| |
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| T |
29963965 |
cttttgataaactatagataatgtgaatgagatc |
29963998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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