View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_low_37 (Length: 400)
Name: NF2622_low_37
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 9283462 - 9283827
Alignment:
| Q |
19 |
aaaatgtacagagaacaaaagtaattcataatgactgtttcaacaacaataaaataaagctaaataaatagttgctgcaacaatatatgacagaaagtct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9283462 |
aaaatgtacagagaacaaaagtaattcataatgactgtttcaacaacaataaaataaagctaaataaatagttgctgcaacaatatatgacagaaagtct |
9283561 |
T |
|
| Q |
119 |
agattctaattatcatccttactgctaatattgtaaatgtaagctgttgtgtcataaccacttaacgcaaaataaatagttgttgcaagtctgcaactat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9283562 |
agattctaattatcatccttactgctaatattgtaaatgtaagctgttgtgtcataaccacttaacgcaaaataaatagttgttgcaagtctgcaactat |
9283661 |
T |
|
| Q |
219 |
cattttcaactctcatatcccaaagcagcggttcattcatgtctctcatatgatgatggtttatcattcatatgatgttgtgcctnnnnnnntgagtggt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9283662 |
cattttcaactctcatatcccaaagcagtggttcattcatgtctctcatatgatgatggtttatcattcatatgatgttgtgcctaaaaaaatgagtggt |
9283761 |
T |
|
| Q |
319 |
tcattcaattcatgtctctcattagatagccctttcaactcttatcttccaaagtagtttattcat |
384 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9283762 |
tcattcaattcatgtctctcattaaatagccctttcaactcttatcttccaaagtagtttattcat |
9283827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 303
Target Start/End: Complemental strand, 35051407 - 35051298
Alignment:
| Q |
191 |
taaatagttgttgcaagtctgcaactatcattttcaactctcatatcccaaagcagcggttcattcatgtctctcatatgatgatggtttatcattcata |
290 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||||||| |||||||| || |||||||||||||| ||| || ||||||||||||| ||||| |
|
|
| T |
35051407 |
taaatagtttctgcaagtctgcaacaatcatcttcaactctcatctcccaaagaagtggttcattcatgtc-ctc--attctgatggtttatcaatcata |
35051311 |
T |
|
| Q |
291 |
tgatgttgtgcct |
303 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
35051310 |
tggtgttgtgcct |
35051298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 303
Target Start/End: Original strand, 53324215 - 53324324
Alignment:
| Q |
191 |
taaatagttgttgcaagtctgcaactatcattttcaactctcatatcccaaagcagcggttcattcatgtctctcatatgatgatggtttatcattcata |
290 |
Q |
| |
|
||||||||| || ||||||||||| ||||| |||||||||| | | |||||| || |||||||||||||| ||| || |||||||||||||| ||||| |
|
|
| T |
53324215 |
taaatagtttctgaaagtctgcaacaatcatcttcaactctcgtcttccaaagaagtggttcattcatgtc-ctc--attatgatggtttatcaatcata |
53324311 |
T |
|
| Q |
291 |
tgatgttgtgcct |
303 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
53324312 |
tggtgttgtgcct |
53324324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University