View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_38 (Length: 398)
Name: NF2622_low_38
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 386
Target Start/End: Original strand, 33931234 - 33931605
Alignment:
| Q |
15 |
atgaaggaaatagatgatgtttatataagcaagatgctacattattggtagcacaatgtatggaccacactactagtagttnnnnnnnncaactttgtga |
114 |
Q |
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| T |
33931234 |
atgaaggaaatagatgatgtttatataagcaagatgctacattattggtagcacaatgtatggaccacactactagtagttaaaaaaaacaactttgtga |
33931333 |
T |
|
| Q |
115 |
gagcaacaggtaaatatgaaccataagctacacaatatcatgaatcaattactgtttatataagagaagggaccaaatatttttagcccctcaaataact |
214 |
Q |
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| T |
33931334 |
gagcaacaggtaaatatgaaccataagctacacaatatcatgaatcaattactgtttatataagagaagggaccaaatatttttagcccctcaaataact |
33931433 |
T |
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| Q |
215 |
gttcatctgatcattccttttcaagctatagttacaacttacttgctttcaactttaataatttgataaggatatctccaagtagttttcatgaaattat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931434 |
gttcatctgatcattccttttcaagctatagttacaacttacttgctttcaactttaataatttgataaggatatctccaagtagttttcatgaaattat |
33931533 |
T |
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| Q |
315 |
atattctgaacatgcaagctaaatttgtactttgacagcttgctttgatgttactaatcaaacaactttctg |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931534 |
atattctgaacatgcaagctaaatttgtactttgacagcttgctttgatgttactaatcaaacaactttctg |
33931605 |
T |
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