View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_39 (Length: 389)
Name: NF2622_low_39
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 31 - 376
Target Start/End: Original strand, 28450229 - 28450590
Alignment:
| Q |
31 |
gaagtttaatgtttgttttacaagactctctctctaaccatgaatcttttttgaaagactctaacgatggatc---------------tacctaccagat |
115 |
Q |
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| T |
28450229 |
gaagtttaatgtttgttttacaaaactctctctctaaccatgaatcttttttgaaagactctaacgatggatctacctaccattgatctacctaccagat |
28450328 |
T |
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| Q |
116 |
tagaaaaacaaattaaaaaccacgtgttagccattacattcacgagcattttttattaatgaaatcaacatgtgcaaattatgaatatacacagttagcc |
215 |
Q |
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| T |
28450329 |
tagaaaaacaaattaaaaacaacgtgttagccattacattcacgagcattttttattaatgaaatcaacatgtgcaaattatgaatatacacagttagcc |
28450428 |
T |
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| Q |
216 |
attacattgcaccttaattgactgaaaaa-atatttttgagaggcaagaatcctaggataataaaagtcaagtctttttccacgtagagaatgtatgcat |
314 |
Q |
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| T |
28450429 |
attacattgcaccttaattgactgaaaaatatatttttgagaggcaagaatcctaggataataaaagtcaagtctttttccacgtagagaatgtatgcat |
28450528 |
T |
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| Q |
315 |
aataatttgaacaagcaattgatccaaatttaattgactgagtagcctagcgtggtgtgttc |
376 |
Q |
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| T |
28450529 |
aataatttgaacaagcaattgatccaaatttaattgactgagtagcctagcgtggtgtgttc |
28450590 |
T |
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