View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_low_4 (Length: 659)

Name: NF2622_low_4
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_low_4
NF2622_low_4
[»] chr2 (1 HSPs)
chr2 (18-649)||(39350544-39351173)


Alignment Details
Target: chr2 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 18 - 649
Target Start/End: Complemental strand, 39351173 - 39350544
Alignment:
Q  18 aaataacacattgcctattgagccaattcatctgagtggtctgtatgctactggatctctctttggaaccacaggtttttgaaactcccaactttcccat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39351173 aaataacacattgcctattgagccaattcatctgagtggtctgtattctactggatctctctttggaaccacaggtttttgaaactcccaactttcccat 39351074  T
Q  118 gtcattcataaatttagtagcatgaacaaaagaatttaagcctttattgattaattttaacatattcaaagtggccgacacaacctttgatcaatgtttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39351073 gtcattcataaatttagtagcatgaacaaaagaatttaagcctttattgattaattttaacatattcaaagtggccgacacaacctttgatcaatgtttt 39350974  T
Q  218 aaatcgaaccaacgagacctctaggtcatgatggttcagctgccttaaactgttcgtactggacgaaactgcgatagaaccatcaaaataactgaactgt 317  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39350973 aaatcgaatcaacgagatctctaggtcatgatggttcagctgccttaaactgttcgtactggacgaaactgcgacagaaccatcaaaataactgaactgt 39350874  T
Q  318 aataaattctggttcaaggtttaacccattgaaccatcctgtttggtttttaaaacactgtgtttgatctctttaaatttcattttttaaaagtttaaca 417  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39350873 aataaattctggttcaaggtttaaccggttgaaccgtcctgtttggtttttaaaacactgtgtttgatctctttaaatttcattttttaaaagtttaaca 39350774  T
Q  418 tggtactatcaatctgacaaaattgaatttctgaatctagagaatgcaacatttgctattcctgatcaagttgttgggatttactttggttgggccaaag 517  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39350773 tggtattatcaatctgacaaaattgaatttctgaatctagagaatgcaacatttgctattcctgatcaagttgttgggatttactttggttgggccaaag 39350674  T
Q  518 ttgattcagataggaagtttaagatattggttagcattaatttggacttctccagtgttacctacaa-aaaatagtgagtactagtcaattactatataa 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||    
T  39350673 ttgattcagataggaagtttaagatattggttagcattaatttggacttctccagtgttacctacaaaaaaatagtgagtactagtcaat---tatataa 39350577  T
Q  617 ctcaacaattccttcatttattctttgatgatg 649  Q
    |||||||||||||||||||||||||||||||||    
T  39350576 ctcaacaattccttcatttattctttgatgatg 39350544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University