View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_low_41 (Length: 379)
Name: NF2622_low_41
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_41 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 164 - 371
Target Start/End: Complemental strand, 1313873 - 1313666
Alignment:
| Q |
164 |
tggcaagatatgattaattaaaaatgaatactaccttgcaagagaggcctccagcttgcaatctttcagaaacagccaaagaccacttgccataagcagc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1313873 |
tggcaagatatgattaattaaaaatgaatactaccttgcaagagaggcctccagcttgcaatctttcagaaacagccgaagaccacttgccataagcagc |
1313774 |
T |
|
| Q |
264 |
tgtcaatccttcaggattggtatcagtcttaccatcaataggggactctccaagttttgacactgcgaaatatgccaagacttggttcccatctttcaaa |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1313773 |
tgtcaatccttcaggattggtatcagtcttaccatcaataggggactctccaagttttgacactgcgaaatatgccaagacttggttcccatctttcaaa |
1313674 |
T |
|
| Q |
364 |
cctttgct |
371 |
Q |
| |
|
|||||||| |
|
|
| T |
1313673 |
cctttgct |
1313666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 1314019 - 1313939
Alignment:
| Q |
18 |
actcgcgtaatcaaaccagaaaaattgttaagcaattcataaatacaataacacatgagaattaaaacactaatatctccc |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1314019 |
actcgcgtaatcaaaccagaaaaattgttaagcaattcataaatacaataacacatgagaattaaaacactaatatctccc |
1313939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University