View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_42 (Length: 364)
Name: NF2622_low_42
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 336
Target Start/End: Complemental strand, 46521132 - 46520806
Alignment:
| Q |
10 |
gcaaagggttagaggaaaaatgtaaaggcatgtcaagaacaagaacacaatcaaatgtacatagattttggggacacaacagtgtaggtgctttgctttc |
109 |
Q |
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| T |
46521132 |
gcaaagggttagaggaaaaatgtaaaggcatgtcaagaacaagaacacaatcaaatgtacatagattttggggacacaacaatgtaggtgctttgctttc |
46521033 |
T |
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| Q |
110 |
tgcgatttgataaaacgtatgtgaaagacaagtgctttactagcctttaagagaaaggagcttcaaaagatgaatgagttaattaagatgacaaatgcta |
209 |
Q |
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| T |
46521032 |
tgcgatttgataaaacgtatgtgaaagacaagtgctttactagcctttaagagaaaggagcttcaaaagatgaatgagttaattaagatgacaaatgcta |
46520933 |
T |
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| Q |
210 |
atgaaaactcggtgagagcttttatcttttgggaaatataaatcgaaacttgaagacaggtttcaatgttaagtgaatnnnnnnnnnnnngcagtttttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46520932 |
atgaaaactcggtgagagcttttatcttttgggaaatataaatcgaaacttgaagacaggtttcaatgttaagtgaataaaaaacaaaaagcagtttttt |
46520833 |
T |
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| Q |
310 |
gccctcttataatattttaccaaaact |
336 |
Q |
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||||||||||||||||||||||||||| |
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| T |
46520832 |
gccctcttataatattttaccaaaact |
46520806 |
T |
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