View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_43 (Length: 359)
Name: NF2622_low_43
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 5856793 - 5857133
Alignment:
| Q |
1 |
gacttttgtaaagaagaaaaaacaatattgagtactctattaatttgtactaatcaatgtcgtgttattccaaattttcatatttattaacagtaattta |
100 |
Q |
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| T |
5856793 |
gacttttgtaaagaagaaaaaacaatattgagtactctattaatttgtactaatcaatgtcgtgtt--tccaaattttcatatttattaatagtaattta |
5856890 |
T |
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| Q |
101 |
tttgttgacaatagacacaattttgataacatcaagaactagagtactctattaaaatccattggaaattctcataaagaaaaagagagtggaagtgaac |
200 |
Q |
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| T |
5856891 |
tttgttggcaatagacacaattttgataacatcaagaactagagtactctattaaaatccattggaaattctcataaagaaaaagagagtggaagtgaac |
5856990 |
T |
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| Q |
201 |
attaaaaatgacaaagtttagttcaacttatgggaagattcttctttctgtttttcttttactatcaaatatttgctttcaatttgcaacatgtggctct |
300 |
Q |
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| T |
5856991 |
attaaaaatgacaaagtttagttcaacttatgggaaaattcttctttctgtttttcttttactatcaaatatttcctttcaagttgcaacatgtggctct |
5857090 |
T |
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| Q |
301 |
atagtaaagtttcttcctggatttcaaggaccccttccttttg |
343 |
Q |
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| T |
5857091 |
atagtaaagtttcttcctggatttcaaggaccccttccttttg |
5857133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 163 - 343
Target Start/End: Original strand, 5863745 - 5863929
Alignment:
| Q |
163 |
tggaaattctcataaagaaaaagagagt-ggaagtgaacattaaaaatgacaaagtttagttcaacttatgggaagattc---ttctttctgtttttctt |
258 |
Q |
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| T |
5863745 |
tggaaattctcataaagaaaaagagagttggaagtgaacattaaaaatgacaaagttaagttcaacttatgggaaggttcatcttctttctattttgctt |
5863844 |
T |
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| Q |
259 |
ttactatcaaatatttgctttcaatttgcaacatgtggctctatagtaaagtttcttcctggatttcaaggaccccttccttttg |
343 |
Q |
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| T |
5863845 |
ttactatcaaatatttgctttcaagttgcaacatgtggttctatagtaaagtttcttcctggattccaaggaccccttccttttg |
5863929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 254 - 343
Target Start/End: Original strand, 5876838 - 5876927
Alignment:
| Q |
254 |
ttcttttactatcaaatatttgctttcaatttgcaacatgtggctctatagtaaagtttcttcctggatttcaaggaccccttccttttg |
343 |
Q |
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| T |
5876838 |
ttctttttttatcaaatatttgctttcaagttgctacatgtggctctatagtaaagtttcttcctggattccaaggaccccttccttttg |
5876927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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