View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_low_44 (Length: 354)
Name: NF2622_low_44
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_44 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 31869566 - 31869894
Alignment:
| Q |
11 |
atgaaggtgagtacaattgagagtggtgaaatttcaaaaggagcatcatccccaagaaaagggatgaagagagggctctcaataatggattttattttga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869566 |
atgaaggtgagtacaattgagagtggtgaaatttcaaaaggagcatcatccccaagaaaagggatgaagagagggctctcaataatggattttattttga |
31869665 |
T |
|
| Q |
111 |
gaatttttgcagctatgagcacacttggaagtgcattgagtatgggaacagcaaagcaaactatgccttttgctacacgttttgttagattcaaagtttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31869666 |
gaatttttgcagctatgagcacacttggaagtgcattgagtatgggaacagcaaagcaaactatgccttttgctacacgttttgttagattcaaagtttc |
31869765 |
T |
|
| Q |
211 |
atttcatgaccttccaacatttttgtaagtcatcactattcctatgtttatataagccttaatataattaacatatcatacacttttactatgaaattgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31869766 |
atttcatgaccttccaacatttttgtaagtcatcactattcctatgtttatataagccttaatataattaacatatcatacacttttact-tgaaattgt |
31869864 |
T |
|
| Q |
311 |
gaacaaagagaaaattgactatgatgatgt |
340 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
31869865 |
gaacaaaaagaaaattgactatgatgatgt |
31869894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University