View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_48 (Length: 339)
Name: NF2622_low_48
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 4213077 - 4213397
Alignment:
| Q |
1 |
caattgtgttgaattaatgattgtaggtttatttgaccttgtgttttgctgtggccgctgctgctgttggagcttacctccatgtccttctcaacattgg |
100 |
Q |
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| T |
4213077 |
caattgtgttgaattaatgattgtaggtttatttgaccttgtgttttgctgtggccgctgctgctgttggagcttacctccatgtccttctcaacattgg |
4213176 |
T |
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| Q |
101 |
tggtattcttacggcaattgcgtgcttgggaattagtgtttggttactctcaacacctccttttgaagaggtatgaatttctgttcctttttgtagcttt |
200 |
Q |
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| T |
4213177 |
tggtattcttaccgcaattgcgtgcttgggaattagtgtttggttactctcaacacctccttttgaagaggtatgaatttctgttcctttttgtagcttt |
4213276 |
T |
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| Q |
201 |
ttgttctttttatggtttcgcggtttcaattgttaattattactaacctgtttgtttctttttatggtatacagcgaaagaggttgactttgttgatggc |
300 |
Q |
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| T |
4213277 |
ttgttctttttatggtttcgcggtttcaattgttaattattactaacctgtttgtttctttttatggtatacagcgaaagaggttgactttgttgatggc |
4213376 |
T |
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| Q |
301 |
cgcggcactgtttcagggtgc |
321 |
Q |
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| T |
4213377 |
cgcggcactgtttcagggtgc |
4213397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 31161477 - 31161332
Alignment:
| Q |
25 |
aggtttatttgaccttgtgttttgctgtggccgctgctgctgttggagcttacctccatgtccttctcaacattggtggtattcttacggcaattgcgtg |
124 |
Q |
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| T |
31161477 |
aggtttatttgaccttgtgttttgttgtagtcgctgctgctattggagcttacctccatgtccttctcaacattggtggtattcttaccacaattgcgtg |
31161378 |
T |
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| Q |
125 |
cttgggaattagtgtttggttactctcaacacctccttttgaagag |
170 |
Q |
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| T |
31161377 |
cttgggaattagtgtttggttactctcaacacctccttctgaagag |
31161332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 31161333 - 31161285
Alignment:
| Q |
273 |
agcgaaagaggttgactttgttgatggccgcggcactgtttcagggtgc |
321 |
Q |
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| T |
31161333 |
agcgaatgaggttgactttgttgatggccgcgacactgtttcagggtgc |
31161285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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