View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_low_5 (Length: 658)
Name: NF2622_low_5
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 46 - 640
Target Start/End: Complemental strand, 40845574 - 40844981
Alignment:
| Q |
46 |
catggatatatttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcgtatg |
145 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
40845574 |
catggacatatttccattgaacaatttgttatgccaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcatcatatg |
40845475 |
T |
|
| Q |
146 |
gttaaccggaggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaat |
245 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40845474 |
gttaaccggaggtcctggatgcggtagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaat |
40845375 |
T |
|
| Q |
246 |
gaatatggatgggacaaggtagcagctattcattcttcccttttctttattccactttagttctcactgataaataatcatcttgcaatatatacttttt |
345 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
40845374 |
gaatatggatgggacaaggtagctgctattcattattcccttttcttttttccactttagttctcactgatacataatcatcttgcaacatatacttttt |
40845275 |
T |
|
| Q |
346 |
tctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgat |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40845274 |
tctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgat |
40845175 |
T |
|
| Q |
446 |
gaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgttcagtaccttattaatttgattaatcacttgaattaagtggttaaac |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40845174 |
gaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgttcagtaccttattaa-ttgattaatcacttgaattaagtggttaaac |
40845076 |
T |
|
| Q |
546 |
nnnnnnnataacgagaaattaagtggttaaacttgattcatagttagttagtagtacttatatttaattttaaaattcaaagacgacattacata |
640 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40845075 |
tttttttataacgagaaattaagtggttaaacttgattcatcgttagttagtagtacttatatttaattttaaaattcaaagacgacattacata |
40844981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 46 - 499
Target Start/End: Complemental strand, 40841172 - 40840724
Alignment:
| Q |
46 |
catggatatatttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcgtatg |
145 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40841172 |
catggacatatttccattgaacaatttgttatgccaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcatatg |
40841073 |
T |
|
| Q |
146 |
gttaaccggaggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaat |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40841072 |
gttaaccggaggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaat |
40840973 |
T |
|
| Q |
246 |
gaatatggatgggacaaggtagcagctattcattcttcccttttctttattccactttagttctcactgataaataatcatcttgcaatatatacttttt |
345 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40840972 |
gaatatggatgggacaaggtagctgctattcactattcccttttctcttttccactttagttctcactgatacataatcatcttgcaatatatacttttt |
40840873 |
T |
|
| Q |
346 |
tctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgat |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| | ||| |||||| |
|
|
| T |
40840872 |
tctttctcttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctataccactgatgatagtgacta---tcgacatgat |
40840776 |
T |
|
| Q |
446 |
gaagacagtattagcaacgatttgtatgacttcttgcaggtaacttgatttgtt |
499 |
Q |
| |
|
|||||| || ||||||| ||| | ||| |||||||||||||||||||||||| |
|
|
| T |
40840775 |
gaagacggtgttagcaatgatctatat--tttcttgcaggtaacttgatttgtt |
40840724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 56 - 266
Target Start/End: Complemental strand, 40852040 - 40851830
Alignment:
| Q |
56 |
tttccattgaacaatttgttatgtcaattgcaggatgttctattttttctttgaatctcgaaacagtaaggatgaccctgtcgtcgtatggttaaccgga |
155 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||| |
|
|
| T |
40852040 |
tttccattgaacaatttgttatgtcgattgcaggatgttctattttttctttgaatctcgaaacactaaggatgaccctgttgttatatggttaactgga |
40851941 |
T |
|
| Q |
156 |
ggtcctggatgcggcagtgaaattgccttgttttatgaaaatggaccatttcagttctcaaaggacaagaacttgtcccttgtttggaatgaatatggat |
255 |
Q |
| |
|
|| || |||||| ||||||||||||| |||| ||||||||||| || ||| | || || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40851940 |
gggccaggatgcagcagtgaaattgctatgttctatgaaaatggtccttttaaattttccaaggataagaacttgtcccttgtttggaatgaatatggat |
40851841 |
T |
|
| Q |
256 |
gggacaaggta |
266 |
Q |
| |
|
|||||| |||| |
|
|
| T |
40851840 |
gggacatggta |
40851830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 355 - 499
Target Start/End: Complemental strand, 40851306 - 40851165
Alignment:
| Q |
355 |
tttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgatgaagacagt |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||| |||||| | |||| |||||||||||| || |
|
|
| T |
40851306 |
tttgtaggcatcaaatattatatttgtagaccaacccactggaacaggtttcagctataccactgatgatagtgacg---ttcgacatgatgaagacggt |
40851210 |
T |
|
| Q |
455 |
attagcaacgatttgtatgacttcttgcaggtaacttgatttgtt |
499 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||||||||||| |||| |
|
|
| T |
40851209 |
gttagcaatgatctatatgatttcttgcaggtaacttgatctgtt |
40851165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 21114572 - 21114684
Alignment:
| Q |
87 |
aggatgttctattttttctttgaatctcgaaacagt---aaggatgaccctgtcgtcgtatggttaaccggaggtcctggatgcggcagtgaaattgcct |
183 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| | ||||||||||| || || ||||||| || |||||||| || |||||||||||| | || | |
|
|
| T |
21114572 |
aggatgttctattttttctttgaatcacgagacactcctaaggatgacccagttgtgatatggttgactggaggtccaggttgcggcagtgaactagctt |
21114671 |
T |
|
| Q |
184 |
tgttttatgaaaa |
196 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21114672 |
tgttttatgaaaa |
21114684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 383 - 487
Target Start/End: Original strand, 21149972 - 21150073
Alignment:
| Q |
383 |
gaccaacccattggatcaggtttcagctacaccaccgatgttagtgatgatattcgccatgatgaagacagtattagcaacgatttgtatgacttcttgc |
482 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||| ||||||| ||||| |||||| || |||||||||||||| ||||| |||||||||| |
|
|
| T |
21149972 |
gaccaacccattgggacaggtttcagctacacttctgatgatagtgat---attcgacatgatcaaactagtattagcaacgacttgtacgacttcttgc |
21150068 |
T |
|
| Q |
483 |
aggta |
487 |
Q |
| |
|
||||| |
|
|
| T |
21150069 |
aggta |
21150073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 21145028 - 21145070
Alignment:
| Q |
354 |
ttttgtaggcatcaaatattatatttgtagaccaacccattgg |
396 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
21145028 |
ttttgtaggcatcaaatattctatttgttgaccaacccattgg |
21145070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 409
Target Start/End: Original strand, 21114899 - 21114954
Alignment:
| Q |
354 |
ttttgtaggcatcaaatattatatttgtagaccaacccattggatcaggtttcagc |
409 |
Q |
| |
|
|||||||||||||||||||| | ||||| || ||||||||||| ||||||||||| |
|
|
| T |
21114899 |
ttttgtaggcatcaaatattctttttgttgatcaacccattgggacaggtttcagc |
21114954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 396
Target Start/End: Original strand, 21124938 - 21124980
Alignment:
| Q |
354 |
ttttgtaggcatcaaatattatatttgtagaccaacccattgg |
396 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||||||| |
|
|
| T |
21124938 |
ttttgtaggcatcaaatattctttttgttgaccaacccattgg |
21124980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 19577713 - 19577598
Alignment:
| Q |
87 |
aggatgttctattttttctttgaatctcgaaacagtaagga---tgaccctgtcgtcgtatggttaaccggaggtcctggatgcggcagtgaaattgcct |
183 |
Q |
| |
|
||||||||||| |||||||||||||| || ||| |||||| ||||||||| ||| | ||||| || ||||| ||||| || |||||||| | || | |
|
|
| T |
19577713 |
aggatgttctactttttctttgaatcacgcaaccataaggaagatgaccctgttgtcatttggttgactggaggacctggctgtagcagtgaattggctt |
19577614 |
T |
|
| Q |
184 |
tgttttatgaaaatgg |
199 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
19577613 |
tgttttacgaaaatgg |
19577598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University