View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_56 (Length: 317)
Name: NF2622_low_56
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_56 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 317
Target Start/End: Complemental strand, 42306700 - 42306388
Alignment:
| Q |
5 |
tcttcttgattctctatattgttaacaaccagaattgaaaataatttctagtattaaacttcgtgtatcttgaagaatattcactaaattctctatatta |
104 |
Q |
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| T |
42306700 |
tcttcttgattctctatattgttaacaaccagaattgaaaataatttctagtattaaacttagtgtatcttgaagaatattcactaaattctctatatta |
42306601 |
T |
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| Q |
105 |
ttannnnnnnnnctaattttctcaataaaattttcataattgagtcactgcacagttaatatttcttccacatttctttctcatatcttgaagaatctgg |
204 |
Q |
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| T |
42306600 |
ttatttttttt-ctaattttctcaataaaattttcataattgagtcactgcacagttaatatttcttccacatttctttctcatatcttgaagaatctgg |
42306502 |
T |
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| Q |
205 |
ctgaaaagtatgatagtttaggagcgttcagaaccgcagtagccgagtaacgcaagatggattagaatcttcaggttgtagcttctg-tgctggtcaaaa |
303 |
Q |
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| T |
42306501 |
ctgaagagtatgatagtttaggagcgttcagaaccgcagtagccgagtaacgcaagatggattagaatcttcaggttgtagcttctgttgctggtcaaaa |
42306402 |
T |
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| Q |
304 |
tcaatacagtttca |
317 |
Q |
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| T |
42306401 |
tcaatacagtttca |
42306388 |
T |
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