View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_low_59 (Length: 307)

Name: NF2622_low_59
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_low_59
NF2622_low_59
[»] chr2 (10 HSPs)
chr2 (17-289)||(2470911-2471184)
chr2 (21-241)||(2486433-2486656)
chr2 (68-199)||(2474209-2474340)
chr2 (96-196)||(2462593-2462696)
chr2 (96-196)||(2466641-2466744)
chr2 (48-224)||(2478778-2478954)
chr2 (123-196)||(3063301-3063377)
chr2 (124-196)||(2469994-2470066)
chr2 (48-224)||(2483282-2483458)
chr2 (133-196)||(2458054-2458117)
[»] chr4 (1 HSPs)
chr4 (123-196)||(18015943-18016019)


Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 2470911 - 2471184
Alignment:
Q  17 agatgcagtgaagatttgggtggaggaggagccacactatgatcactataataactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2470911 agatgcagtgaagatttgggtggaggaggagccacactatgatcactataataactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgg 2471010  T
Q  117 gaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacctggtaacattgctggtcaat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2471011 gaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacctggtaacattgctggtcaat 2471110  T
Q  217 taccgtactaagtgactcagatcaatatttttatgcagtagtatata-ttttataagtcacttccctctcttat 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  2471111 taccgtactaagtgactcagatcaatatttttatgcagtagtatatatttttataagtgacttccctctcttat 2471184  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 2486433 - 2486656
Alignment:
Q  21 gcagtgaagatttgggtggaggaggagccacactatgatcactataataactcatgtgttggtggt---gaatgtcttcattatacccaggtgatatggg 117  Q
    ||||||||| | |||||||| || || ||| ||| | ||||||||  |||||||||| ||| ||||   ||||| |  |||||||| |||||  | ||||    
T  2486433 gcagtgaagttgtgggtggatgaagaaccatactttaatcactatgctaactcatgtattgatggtcatgaatgccaccattatactcaggttgtttggg 2486532  T
Q  118 aaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacctggtaacattgctggtcaatt 217  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| ||| ||||  |||||||||||||||| || ||||||||||||||||| |||||    
T  2486533 aaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggctcatttgttacttgcaattatgatccccctggtaacattgctggccaatt 2486632  T
Q  218 accgtactaagtgactcagatcaa 241  Q
    ||| |||||||||| ||| |||||    
T  2486633 accatactaagtgattcatatcaa 2486656  T

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Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 2474209 - 2474340
Alignment:
Q  68 taactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggc 167  Q
    |||||||||||||||||||||||| || |||||||| |||||| | |||  |||  || ||||| ||||||||| |||||||| |||||||||||||||     
T  2474209 taactcatgtgttggtggtgaatgcctccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggagga 2474308  T
Q  168 acattcattacttgcaattatgacccacctgg 199  Q
    |||||||||||||||||||| ||||| |||||    
T  2474309 acattcattacttgcaattacgacccccctgg 2474340  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 2462593 - 2462696
Alignment:
Q  96 cattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacc 192  Q
    ||||||||||||||  | |||  ||| ||||||||||||||||||| ||||||||||||||   ||||| |||| ||||||||||| |||||||| ||||    
T  2462593 cattatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacc 2462692  T
Q  193 cacc 196  Q
    ||||    
T  2462693 cacc 2462696  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 2466641 - 2466744
Alignment:
Q  96 cattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacc 192  Q
    ||||||||||||||  | |||  ||| ||||||||||||||||||| ||||||||||||||   ||||| |||| ||||||||||| |||||||| ||||    
T  2466641 cattatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacc 2466740  T
Q  193 cacc 196  Q
    ||||    
T  2466741 cacc 2466744  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 2478778 - 2478954
Alignment:
Q  48 ccacactatgatcactataataactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaag 147  Q
    ||||||| |||| |||||  ||||  |||| ||| ||||||||||| ||||| |||||||||  | |||  |   |||| |||| |||||||||||||||    
T  2478778 ccacactttgataactatcttaacaaatgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaag 2478877  T
Q  148 tgagatgtgataatggaggcacattcattacttgcaattatgacccacctggtaacattgctggtcaattaccgtac 224  Q
    ||| |||| ||||||| || |||||  ||||||| |||||| | || || ||||||||| |||| ||||||||||||    
T  2478878 tgaaatgtaataatggtggaacatttgttacttgtaattattatcccccaggtaacattcctggccaattaccgtac 2478954  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 3063377 - 3063301
Alignment:
Q  123 tcacaacgtgttggatgtggcaaagtgagatgtga---taatggaggcacattcattacttgcaattatgacccacc 196  Q
    ||||||||||||||||||| |||||||||||||||   |||| |||| ||||||||||| |||||||| ||||||||    
T  3063377 tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc 3063301  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 2469994 - 2470066
Alignment:
Q  124 cacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc 196  Q
    |||||||  ||||||||| |||||||| |||| |||| ||||| |||||||||||||||||||| ||||||||    
T  2469994 cacaacggattggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccacc 2470066  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 224
Target Start/End: Original strand, 2483282 - 2483458
Alignment:
Q  48 ccacactatgatcactataataactcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaag 147  Q
    ||||||| |||| |||||  ||||  |||| ||| ||||||||||| ||||| |||||||||  | |||  |   |||| |||| |||||||||||||||    
T  2483282 ccacactttgataactatcttaacaaatgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaag 2483381  T
Q  148 tgagatgtgataatggaggcacattcattacttgcaattatgacccacctggtaacattgctggtcaattaccgtac 224  Q
    ||| |||| ||||||| || |||||  ||||||| |||||| | || || ||||| ||| |||| ||||||||||||    
T  2483382 tgaaatgtaataatggtggaacatttgttacttgtaattattatcccccaggtaatattcctggccaattaccgtac 2483458  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 2458054 - 2458117
Alignment:
Q  133 ttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc 196  Q
    ||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||| || |||||    
T  2458054 ttggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacc 2458117  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 18015943 - 18016019
Alignment:
Q  123 tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc 196  Q
    ||||||||||||||||||| ||||||||||||||   ||||| |||| ||||||||||| |||||||| ||||||||    
T  18015943 tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc 18016019  T

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