View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_60 (Length: 306)
Name: NF2622_low_60
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 33306147 - 33306426
Alignment:
| Q |
17 |
acattggatatatattccaccttgagagagggtggtaaagtgtaattaaatattagtttaggcaattacttgttagacaagtaagtgcgtagttcggtag |
116 |
Q |
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| T |
33306147 |
acattggatatatattccaccttgagagagggtggtaaagtgtaattaaatattagtttaggcaattacttgttagacaagtaagtgcgtagttcagtaa |
33306246 |
T |
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| Q |
117 |
ctaactaactaactgtcttgacagttatggatgttataataattggttatagttaaataactaactatagttaagcgtgttgggtacttagaatagtata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33306247 |
ctaactaactaactgtcttgacagttatggatgttataataattggttatagttaaataactaactatagttaagcgtgttgggtacttagaatagtata |
33306346 |
T |
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| Q |
217 |
aataagtgtgactctacattgtaaaattcggattttgtgattacactttcctttccttcaattcattgtt-catagttcat |
296 |
Q |
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| T |
33306347 |
aataagtgtgactctacattgtaaaattcggattttgtgaatacac-ttcctttccttcaattcattgttccatagttcat |
33306426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 4307513 - 4307406
Alignment:
| Q |
118 |
taactaactaactgtcttgacagttatggatgttataataattggttatagttaaataactaactatagttaagcgtgttgggtacttagaatagtataa |
217 |
Q |
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||||||||||||| | |||||||||||||| |||| |||| || |||||||||||| |||||||||||||||||| ||| ||||| ||| ||||||||| |
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| T |
4307513 |
taactaactaactcttttgacagttatggaagttacaatagttagttatagttaaacaactaactatagttaagcttgtgaggtacatagcatagtataa |
4307414 |
T |
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| Q |
218 |
ataagtgt |
225 |
Q |
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| T |
4307413 |
ataagtgt |
4307406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 18096436 - 18096366
Alignment:
| Q |
119 |
aactaactaactgtcttgacagttatggatgttataataattggttatagttaaataactaactatagttaagc |
192 |
Q |
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|||||||||||||| ||||| |||||||| |||| | | | ||||||||||||||||||||||||||||||| |
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| T |
18096436 |
aactaactaactgttttgactgttatggaagttacagtta---gttatagttaaataactaactatagttaagc |
18096366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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