View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_61 (Length: 305)
Name: NF2622_low_61
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 52428826 - 52429107
Alignment:
| Q |
18 |
aatatagataagtaaactggtaatgtgagagggaatgagcattaaacctcgagaatttgatgagctcttttcatattagcagagagaggagaatcaaact |
117 |
Q |
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| T |
52428826 |
aatatagataagtaaactggtaatgtgagagggaatgagcattaaacctcgagaatttgatgagctcttttcatattagcagagagaggagaatcaaact |
52428925 |
T |
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| Q |
118 |
taaacttaacaacttcatcaaccatccatttttcatgaatagcatccaccaattcctgagtaataccggcaactccaacactgaacctctccaccatcct |
217 |
Q |
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| T |
52428926 |
taaacttaacaacttcatcaaccatccatttttcatgaatagcatccaccaattcctgagtaataccggcaactccaacactgaacctctccaccatcct |
52429025 |
T |
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| Q |
218 |
caacgccatatttcttagtctccgcaactcatgttccggaatcaacttctctgctaactcagtattacttctcctttgcttc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
52429026 |
caacgccatatttcttagtctccgcaactcatgttccggaatgaacttctctgctaactcagtattacttctccttttcttc |
52429107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 27412812 - 27412569
Alignment:
| Q |
15 |
tcaaatatagataagtaaactggtaatgtgagagggaatgagcattaaacctcgagaatttgatgagctcttttcatattagcagagagaggagaatcaa |
114 |
Q |
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||||||| ||||||||||| || ||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
27412812 |
tcaaatagagataagtaaaatgataatgtgagagggaaggagcattgaacctcaagaatttgattagctcttttcatattagcagaaagaggagaatcaa |
27412713 |
T |
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| Q |
115 |
acttaaacttaacaacttcatcaaccatccatttttcatgaatagcatccaccaattcctgagtaataccggcaactccaacactgaacctctccaccat |
214 |
Q |
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| T |
27412712 |
acttaaacttaacaacttcatcaaccatccatttttcatgaatagcatccaccaattcgtgagtaataccagcaactccaacaccgaacctctccaccat |
27412613 |
T |
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| Q |
215 |
cctcaacgccatatttcttagtctccgcaactcatgttccggaa |
258 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27412612 |
catcaacgccatatttcttagtctccgcaactcatgttctggaa |
27412569 |
T |
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