View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_low_67 (Length: 287)
Name: NF2622_low_67
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_67 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 36127356 - 36127629
Alignment:
| Q |
14 |
agatgaaagtaaggacaagttcttgaatcaagtgatcttttcctattagcatcctttgtttttctgaaatacttgttgatattctcccacttctctttgc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36127356 |
agatgaaagtaaggacaagttcttgaatcaagtgatcttttcctattagcatcctttgtttttctgaaatacttgttgatattctcccacttctctttgc |
36127455 |
T |
|
| Q |
114 |
atctctttgcacttctcttgtatcctaactccaacattccttgtgaaattctctcccaaagtggtgccttgttattgctgtttccttccttttcttcatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36127456 |
atctctttgcacttctcttgtatcctaactccaacattccttgtgaaattctctcccaaagtggtgccttgttattgctgtttccttccttttcttcatt |
36127555 |
T |
|
| Q |
214 |
gttgttgttgcacctcaagtttatcaatgccaacacttcatcttttggccatcttctaccaatatcgtctctct |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36127556 |
gttgttgttgcacctcaagtttatcaatgccaacacttcatcttttggccatcttctaccaatatcgtctctct |
36127629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 47422929 - 47422822
Alignment:
| Q |
64 |
atcctttgtttttctgaaatacttgttgatattctcccacttctctttgcatctctttgcacttctcttgtatcctaactccaacattccttgtgaaatt |
163 |
Q |
| |
|
||||||||| ||| | |||||||| || || || ||||| || ||||| || |||||||| |||||||||||||| ||||| ||||| |||| || ||| |
|
|
| T |
47422929 |
atcctttgtctttttaaaatacttatttatgttttcccatttttctttacacctctttgcgcttctcttgtatcccaactcaaacatcccttcagagatt |
47422830 |
T |
|
| Q |
164 |
ctctccca |
171 |
Q |
| |
|
|||||||| |
|
|
| T |
47422829 |
ctctccca |
47422822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University