View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_low_69 (Length: 284)

Name: NF2622_low_69
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_low_69
NF2622_low_69
[»] chr1 (3 HSPs)
chr1 (181-250)||(50266287-50266356)
chr1 (204-246)||(50277901-50277943)
chr1 (204-246)||(50289569-50289611)
[»] chr6 (5 HSPs)
chr6 (181-250)||(33707476-33707545)
chr6 (209-250)||(6023350-6023391)
chr6 (206-250)||(6022411-6022455)
chr6 (206-250)||(7190965-7191009)
chr6 (206-250)||(13220687-13220731)
[»] chr8 (4 HSPs)
chr8 (204-250)||(39137949-39137995)
chr8 (204-250)||(35352295-35352341)
chr8 (206-245)||(18195368-18195407)
chr8 (214-250)||(5566308-5566344)
[»] chr4 (2 HSPs)
chr4 (181-250)||(8113340-8113409)
chr4 (206-250)||(55903172-55903216)
[»] chr5 (3 HSPs)
chr5 (204-250)||(8469380-8469426)
chr5 (206-250)||(19080810-19080854)
chr5 (206-250)||(20339668-20339712)
[»] chr3 (10 HSPs)
chr3 (204-250)||(32982412-32982458)
chr3 (206-250)||(16913795-16913839)
chr3 (206-250)||(24199972-24200016)
chr3 (57-99)||(37066630-37066672)
chr3 (206-250)||(14404552-14404596)
chr3 (206-250)||(17195277-17195321)
chr3 (206-250)||(17195762-17195806)
chr3 (206-250)||(24199377-24199421)
chr3 (206-250)||(44266061-44266105)
chr3 (206-250)||(54515542-54515586)
[»] chr2 (6 HSPs)
chr2 (204-250)||(34239442-34239488)
chr2 (206-250)||(20633120-20633164)
chr2 (211-250)||(16178119-16178158)
chr2 (206-245)||(20651018-20651057)
chr2 (206-248)||(20634077-20634119)
chr2 (206-250)||(20651359-20651403)
[»] scaffold0008 (1 HSPs)
scaffold0008 (206-250)||(256971-257015)
[»] scaffold0039 (2 HSPs)
scaffold0039 (206-250)||(62719-62763)
scaffold0039 (206-250)||(63560-63604)


Alignment Details
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 50266287 - 50266356
Alignment:
Q  181 ttattctatattggatgacacaatcatcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||    
T  50266287 ttattttatattggatgacgcaatcatcatcataaaataataaaacaattaatatcttttaattgattga 50266356  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 50277943 - 50277901
Alignment:
Q  204 tcatcaccacaaaataataaaacaattaatatcttttaattga 246  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  50277943 tcatcaccccaaaataataaaacaattaatgtcttttaattga 50277901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 50289611 - 50289569
Alignment:
Q  204 tcatcaccacaaaataataaaacaattaatatcttttaattga 246  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  50289611 tcatcaccccaaaataataaaacaattaatgtcttttaattga 50289569  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 33707545 - 33707476
Alignment:
Q  181 ttattctatattggatgacacaatcatcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||||||||||||||    ||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  33707545 ttattctatattggagtcaacactcatcaccacaaaataataaaacaattaatgtcttttaattgattga 33707476  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 6023391 - 6023350
Alignment:
Q  209 accacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||||||||||| |||||||| ||| ||||||||||||||||    
T  6023391 accacaaaataacaaaacaataaatgtcttttaattgattga 6023350  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 6022411 - 6022455
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||||||| ||| |||| |||||||||||    
T  6022411 atcaccacaaaataacaaaacaataaatgtcttataattgattga 6022455  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 7190965 - 7191009
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||| |||||||||| |||||||| ||| ||||||||||||||||    
T  7190965 atcatcacaaaataagaaaacaataaatgtcttttaattgattga 7191009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 13220731 - 13220687
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||| |||||||||| |||||||| ||| ||||||||||||||||    
T  13220731 atcatcacaaaataagaaaacaataaatgtcttttaattgattga 13220687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 39137995 - 39137949
Alignment:
Q  204 tcatcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||    
T  39137995 tcatcaccacaaaataataaaacaattaatgtcttttaattgattga 39137949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 35352341 - 35352295
Alignment:
Q  204 tcatcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  35352341 tcatcaccacaaaataacaaaacaataaatgtcttttaattgattga 35352295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 18195368 - 18195407
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattg 245  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  18195368 atcaccacaaaataacaaaacaataaatatcttttaattg 18195407  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 5566308 - 5566344
Alignment:
Q  214 aaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  5566308 aaaataacaaaacaataaatatcttttaattgattga 5566344  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 8113409 - 8113340
Alignment:
Q  181 ttattctatattggatgacacaatcatcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||||||||||||||    ||| |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  8113409 ttattctatattggagtcaacactcatcaccacaaaataataaaacaatgaatgtcttttaattgattga 8113340  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 55903216 - 55903172
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||    
T  55903216 atcatcacaaaataacaaaacaataaatatcttttaattgattga 55903172  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 8469380 - 8469426
Alignment:
Q  204 tcatcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  8469380 tcatcatcacaaaataacaaaacaattaataacttttaattgattga 8469426  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 19080854 - 19080810
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||||||| ||| ||||||||||| ||||    
T  19080854 atcaccacaaaataacaaaacaataaatgtcttttaattgcttga 19080810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 20339712 - 20339668
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||| ||||||| |||||||| ||| ||||||||||||||||    
T  20339712 atcaccagaaaataacaaaacaataaatgtcttttaattgattga 20339668  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 32982412 - 32982458
Alignment:
Q  204 tcatcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  32982412 tcatcatcacaaaataacaaaacaattaataacttttaattgattga 32982458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 16913839 - 16913795
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||    
T  16913839 atcaccacaaaataacaaaacaattaatgtcttttaattgtttga 16913795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 24200016 - 24199972
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||||||||||| ||||||||||| ||||    
T  24200016 atcaccacaaaataacaaaacaattaatgtcttttaattgtttga 24199972  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 37066672 - 37066630
Alignment:
Q  57 atatttatatatgatgtgagatattttgacttcaagagtaagt 99  Q
    |||| ||||||||| | ||||||||||||||||||||||||||    
T  37066672 atatatatatatgaggagagatattttgacttcaagagtaagt 37066630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 14404596 - 14404552
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||||||| ||| ||| ||||||||||||    
T  14404596 atcaccacaaaataacaaaacaataaatgtctcttaattgattga 14404552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 17195277 - 17195321
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||||||| ||||| ||||||||| ||||    
T  17195277 atcaccacaaaataacaaaacaataaatattttttaattgcttga 17195321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 17195806 - 17195762
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||||||| ||| ||||||||||| ||||    
T  17195806 atcaccacaaaataacaaaacaataaatgtcttttaattgtttga 17195762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 24199377 - 24199421
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||| |||||||||| |||||||| ||| ||||||||||||||||    
T  24199377 atcatcacaaaataacaaaacaataaatgtcttttaattgattga 24199421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 44266061 - 44266105
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||| ||||||| |||||||| ||| ||||||||||||||||    
T  44266061 atcaccataaaataacaaaacaataaatgtcttttaattgattga 44266105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 54515586 - 54515542
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||||||| ||| ||||||||||| ||||    
T  54515586 atcaccacaaaataacaaaacaataaatgtcttttaattgtttga 54515542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 34239488 - 34239442
Alignment:
Q  204 tcatcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  34239488 tcatcatcacaaaataacaaaacaattaataacttttaattgattga 34239442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 20633120 - 20633164
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||    
T  20633120 atcaccacaaaataacaaaacaataaatgtcttttaattgattga 20633164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 16178119 - 16178158
Alignment:
Q  211 cacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||||||||| |||||||||||| ||||||||||||||||    
T  16178119 cacaaaataacaaaacaattaatgtcttttaattgattga 16178158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 20651018 - 20651057
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattg 245  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  20651018 atcaccacaaaataataaaacaataaatgtcttttaattg 20651057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 20634119 - 20634077
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgatt 248  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||    
T  20634119 atcaccacaaaataacaaaacaataaatgtcttttaattgatt 20634077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 20651403 - 20651359
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||||||| ||| ||||||||||| ||||    
T  20651403 atcaccacaaaataacaaaacaataaatgtcttttaattgcttga 20651359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 256971 - 257015
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    |||| |||||||||| |||||||| ||||||||||||||||||||    
T  256971 atcatcacaaaataacaaaacaatgaatatcttttaattgattga 257015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 62719 - 62763
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| ||| |||| ||| ||||||||||||||||    
T  62719 atcaccacaaaataacaaagcaataaatgtcttttaattgattga 62763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 63604 - 63560
Alignment:
Q  206 atcaccacaaaataataaaacaattaatatcttttaattgattga 250  Q
    ||||||||||||||| |||| ||| ||| ||||||||||||||||    
T  63604 atcaccacaaaataacaaaagaataaatgtcttttaattgattga 63560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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