View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2622_low_7 (Length: 645)
Name: NF2622_low_7
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 587; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 16 - 630
Target Start/End: Original strand, 3878861 - 3879475
Alignment:
| Q |
16 |
cagtaacatggcacatgttgtacttgattgccctcttctacatgaacttgatattggttcttgcaacaaacttcctgatgctgttattcgtgctgctgca |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3878861 |
cagtaacatggcacaggttgtacttgattgccctcttctacatgaacttgatattggttcttgcaacaaacttcctgatgctgttattcgtgctgttgca |
3878960 |
T |
|
| Q |
116 |
acttcatgccctcaactggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3878961 |
acttcatgccctcaactggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggtt |
3879060 |
T |
|
| Q |
216 |
ttcttgattcatcatactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaaagta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879061 |
ttcttgattcatcatactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaaagta |
3879160 |
T |
|
| Q |
316 |
tatggcttttctcttttaagtcggttcggatgacaatgttgacgattctaaggcttcatagctgcgagggcatcacttctgcatcaatggctgctatagc |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879161 |
tatggcttttctcttttaagtcggttcggatgacaatgttgacaattctaaggcttcatagctgcgagggcatcacttctgcatcaatggctgctatagc |
3879260 |
T |
|
| Q |
416 |
tcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacattttatcaccccg |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
3879261 |
tcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgattaatacatttaaccaccccg |
3879360 |
T |
|
| Q |
516 |
ccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaatattagattggcgtactgtcgcaagt |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3879361 |
ccaatgcaggttttgtaactccgcagttgcagtctattgacttgagcgtcgttggatcttccacatttgaagaatattagattggcgtactgtcgcaagt |
3879460 |
T |
|
| Q |
616 |
atgtttctgcttcat |
630 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3879461 |
atgtttctgcttcat |
3879475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 16 - 630
Target Start/End: Original strand, 3864864 - 3865493
Alignment:
| Q |
16 |
cagtaacatggcacatgttgtacttgattgccctcttctacatgaacttgatattggttcttgcaacaaacttcctgatgctgttattcgtgctgctgca |
115 |
Q |
| |
|
||||||||||||||| ||||| ||| ||||||||||||| | |||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
3864864 |
cagtaacatggcacaagttgtgcttaattgccctcttctgcttgaacttgatatgggttcttgccacaaacttcctgatgctgctattcgtgctgctgca |
3864963 |
T |
|
| Q |
116 |
acttcatgccctcaactggtgaagctggacatgcgtaactgttcttgtgtcagcgatgaaaccctgcgtgaaatagcgcagcattgtcctaatcttggtt |
215 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
3864964 |
acttcatgccctcaactagtgaaactggacatgcgtaattgttcttgtgtcagcgatgaaacactgcgtgaaatagcacaacattgtcctaatcttggtt |
3865063 |
T |
|
| Q |
216 |
ttcttgattcatcatactgcccaagcatatctttggaggtgtgcttcaaattgtatactcgcttttttgcatatgtaagcttgtattttgaactaaagta |
315 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||| |||| ||||||||||||| | ||| |
|
|
| T |
3865064 |
ttcttgatgcatcatactgcccaaacatatctttggaggtgtgctttaaactgtatact-tattttttgcatatttaagattgtattttgaacaagagtt |
3865162 |
T |
|
| Q |
316 |
tatggct------------------tttctcttttaagtcggttcggatgacaatgttgacgattctaaggcttcatagctgcgagggcatcacttctgc |
397 |
Q |
| |
|
| | ||| ||||| ||||||||| ||||| | |||||||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
3865163 |
tctagctttgtctgacacggtcacctttcttttttaagtctgttcgactcccaatgttgaccattctaagacttcatagctgtgagggcatcacttctgc |
3865262 |
T |
|
| Q |
398 |
atcaatggctgctatagctcatagctctatgttggaggtattttatctgtcccagatattgatattaatgacatgtctgaattcatgagtattacgatta |
497 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||| |||| ||| ||||||||||||||||| ||| ||||||||||| |||||||| || | |
|
|
| T |
3865263 |
gtcaatggctgcaatagctcacagttctatgttggaggtatgttatttgttccagatattgatattaacgacttgtctgaattcccgagtattaggacga |
3865362 |
T |
|
| Q |
498 |
atacattttatcaccccgccaatgcaggttttgtaactccgcagttgcagtctattgacttaagcgtcgttggatcttccacgtttgaagaatattagat |
597 |
Q |
| |
|
||||| || | | |||||||||||||||| | || || ||||||||||||||||| | |||||||||||||||||||||| |||||||||||| |
|
|
| T |
3865363 |
gtacatgacataa--ctgccaatgcaggttttggagcttgacaattgcagtctattgacttcggtgtcgttggatcttccacgtttgcagaatattagat |
3865460 |
T |
|
| Q |
598 |
tggcgtactgtcgcaagtatgtttctgcttcat |
630 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
3865461 |
tggtgtactgtcgcaagtatgtttctgcttcat |
3865493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 8357532 - 8357452
Alignment:
| Q |
74 |
tcttgcaacaaacttcctgatgctgttattcgtgctgctgcaacttcatgccctcaactggtgaagctggacatgcgtaac |
154 |
Q |
| |
|
|||||| ||||||||||| |||||| ||| || | ||||||| ||||||||||| | | |||||| |||||||| ||||| |
|
|
| T |
8357532 |
tcttgccacaaacttccttatgctgctatcggttcggctgcaagttcatgccctctattagtgaagatggacatgtgtaac |
8357452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University