View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_low_82 (Length: 253)

Name: NF2622_low_82
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_low_82
NF2622_low_82
[»] chr7 (5 HSPs)
chr7 (33-216)||(25674892-25675075)
chr7 (146-215)||(25675746-25675815)
chr7 (114-215)||(44390691-44390791)
chr7 (134-215)||(48627763-48627844)
chr7 (151-215)||(26582629-26582693)
[»] chr2 (11 HSPs)
chr2 (33-215)||(4855226-4855408)
chr2 (111-215)||(42330918-42331022)
chr2 (151-215)||(4854473-4854537)
chr2 (146-216)||(38823853-38823923)
chr2 (114-215)||(38823220-38823321)
chr2 (126-215)||(40321142-40321231)
chr2 (115-209)||(16870585-16870679)
chr2 (146-216)||(39062899-39062969)
chr2 (144-209)||(35029859-35029924)
chr2 (158-215)||(40320241-40320298)
chr2 (115-215)||(34229043-34229143)
[»] chr1 (3 HSPs)
chr1 (94-216)||(41459386-41459508)
chr1 (115-215)||(7338767-7338867)
chr1 (105-215)||(46178120-46178230)
[»] chr8 (7 HSPs)
chr8 (111-215)||(40030495-40030599)
chr8 (144-215)||(11519350-11519421)
chr8 (112-215)||(42578709-42578812)
chr8 (114-215)||(20168982-20169082)
chr8 (105-215)||(13017742-13017852)
chr8 (178-215)||(6462647-6462684)
chr8 (144-216)||(13017084-13017156)
[»] chr4 (7 HSPs)
chr4 (147-215)||(31414076-31414144)
chr4 (126-215)||(17869644-17869733)
chr4 (159-216)||(27339715-27339772)
chr4 (130-215)||(41327702-41327787)
chr4 (116-215)||(17273625-17273724)
chr4 (151-183)||(27860987-27861019)
chr4 (171-215)||(44096013-44096057)
[»] scaffold0098 (1 HSPs)
scaffold0098 (131-215)||(52264-52348)
[»] chr5 (3 HSPs)
chr5 (115-209)||(33530668-33530762)
chr5 (114-215)||(2398221-2398321)
chr5 (125-216)||(31607255-31607346)
[»] chr3 (4 HSPs)
chr3 (125-215)||(40613055-40613145)
chr3 (150-215)||(44637768-44637833)
chr3 (115-215)||(3799832-3799931)
chr3 (146-215)||(44636976-44637047)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 33 - 216
Target Start/End: Complemental strand, 25675075 - 25674892
Alignment:
Q  33 agaggaagatgaaagttaagcattgtatcaggagaggnnnnnnngatgcgttacatcttttgtaacaatacttatttctaatcttttaatcatagccttt 132  Q
    |||||||||||||||||||||| ||||||| ||||||       |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25675075 agaggaagatgaaagttaagcactgtatcaagagaggaaaaaaagatgcgttacattttttgtaacaatacttatttctaatcttttaatcatagccttt 25674976  T
Q  133 ggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactcg 216  Q
    | |||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  25674975 gaatttgtttgttccacgtgtcacacatctatacattgaaaaggagtaaattgagcaaacacaaatggagcaaagatgaactcg 25674892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 25675746 - 25675815
Alignment:
Q  146 ccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    |||| |||||||||||||| ||||||||| |||||||| || | ||||||||||||||||||||||||||    
T  25675746 ccacatgtcacacatctatacattgaaaaggagtaaatggagccaacataaatggagcaaagatgaactc 25675815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 44390691 - 44390791
Alignment:
Q  114 tcttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaac 213  Q
    |||||||||  |||||||| ||||| ||| | |||| ||||||| |||| || ||| |||| |||||||| || ||| ||||||||||||||||||| ||    
T  44390691 tcttttaattgtagcctttagattttttt-tgccacatgtcacatatctgtgaattaaaaaggagtaaatggagcaatcataaatggagcaaagatgcac 44390789  T
Q  214 tc 215  Q
    ||    
T  44390790 tc 44390791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 48627844 - 48627763
Alignment:
Q  134 gatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    ||||||||| |||||| ||||| ||||  ||||||| |||| |||||||| || |||   ||||||||||||||||||||||    
T  48627844 gatttgttttttccacatgtcaaacattcatgcattcaaaaggagtaaatggagcaatggtaaatggagcaaagatgaactc 48627763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 26582629 - 26582693
Alignment:
Q  151 tgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    |||||||||||| |  ||| |||| |||||||| || |||| |||||||||| ||||||||||||    
T  26582629 tgtcacacatctgtaaatttaaaaggagtaaatggagcaaatataaatggagtaaagatgaactc 26582693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 4855226 - 4855408
Alignment:
Q  33 agaggaagatgaaagttaagcattgtatcaggagaggnnnnnnngatgcgttacatcttttgtaacaatacttatttctaatcttttaatcatagccttt 132  Q
    |||||||||||||||||||  | ||||||| ||||||       |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  4855226 agaggaagatgaaagttaacgactgtatcaagagaggaaaaaaagatgcgttacattttttgtaacgatacttatttctaatcttttaatcatagccttt 4855325  T
Q  133 ggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    | |||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  4855326 gaatttgtttgttccacgtgtcacacatctatacattgaaaaggagtaaattgagcaaacataaatggagcaaagatgaactc 4855408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 42330918 - 42331022
Alignment:
Q  111 taatcttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatg 210  Q
    |||||||||||||  | ||||||||||| ||| |  || |||||||||||||||||||||||||  | |||||||| |||   |||||||||||||||||    
T  42330918 taatcttttaatctcaacctttggatttatttttgtcaagtgtcacacatctatgcattgaaaagaaataaattgagcaagagtaaatggagcaaagatg 42331017  T
Q  211 aactc 215  Q
    |||||    
T  42331018 aactc 42331022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 4854537 - 4854473
Alignment:
Q  151 tgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    |||||||||||||| ||||||||| |||||||| ||   ||||||||||||||||||||||||||    
T  4854537 tgtcacacatctatacattgaaaaggagtaaatggagtcaacataaatggagcaaagatgaactc 4854473  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 38823853 - 38823923
Alignment:
Q  146 ccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactcg 216  Q
    |||| |||||||||||||| |||||||||||||||||||||  | || |||||| || |||||||||||||    
T  38823853 ccacatgtcacacatctatacattgaaaaagagtaaattgaggagacttaaatgaaggaaagatgaactcg 38823923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 38823321 - 38823220
Alignment:
Q  114 tcttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaac 213  Q
    |||||||||| | | ||||  |||| ||| |||||| |||||||||||| |  ||| |||| |||||||| || |||| |||||||||||||||||||||    
T  38823321 tcttttaatctttgtctttacatttattttttccacatgtcacacatctgtaaattcaaaaggagtaaatggagcaaatataaatggagcaaagatgaac 38823222  T
Q  214 tc 215  Q
    ||    
T  38823221 tc 38823220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 40321142 - 40321231
Alignment:
Q  126 agcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    |||| |||||||| ||| | ||| ||||||  ||||||||||||||||| |||||||| || |||   ||||||||||||||||||||||    
T  40321142 agcccttggatttatttttaccatgtgtcatgcatctatgcattgaaaaggagtaaatggagcaaggctaaatggagcaaagatgaactc 40321231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 16870679 - 16870585
Alignment:
Q  115 cttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagat 209  Q
    |||||||||  | ||||||||||| ||| | | | ||||||||||||||||||||||||| || ||||||||  ||   ||||||||||||||||    
T  16870679 cttttaatctcaacctttggatttatttttactatgtgtcacacatctatgcattgaaaaggaataaattgaggaaggctaaatggagcaaagat 16870585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 39062899 - 39062969
Alignment:
Q  146 ccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactcg 216  Q
    |||| ||||| |||||||||  ||||||  | |||||||||||||||||||||||| |||||||| |||||    
T  39062899 ccacatgtcatacatctatgacttgaaattgggtaaattgaacaaacataaatggaacaaagatggactcg 39062969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 35029859 - 35029924
Alignment:
Q  144 ttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagat 209  Q
    |||||| |||||||||||||||  ||||||  | |||||||||  |||| ||||||||||||||||    
T  35029859 ttccacatgtcacacatctatgacttgaaatggggtaaattgaggaaacctaaatggagcaaagat 35029924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 40320298 - 40320241
Alignment:
Q  158 catctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    ||||||||||||||||| || ||||| || |||   ||||||||||||||||||||||    
T  40320298 catctatgcattgaaaaggattaaatggagcaaggctaaatggagcaaagatgaactc 40320241  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 34229043 - 34229143
Alignment:
Q  115 cttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaact 214  Q
    |||||||||  |||| |||| ||| ||| |||||| |||||||||||||||  || |||  | |||||||||  || | ||||||||||||||||| |||    
T  34229043 cttttaatctcagccattggttttattttttccacatgtcacacatctatgacttaaaatggggtaaattgaggaatcttaaatggagcaaagatggact 34229142  T
Q  215 c 215  Q
    |    
T  34229143 c 34229143  T

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Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 41459386 - 41459508
Alignment:
Q  94 gtaacaatacttatttctaatcttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaaca 193  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  41459386 gtaacaatacttatttctaatcttttaatcatagtctttggatttgtttgttccacgtgtcacacatctatgtattgaaaatgagtaaattgaacaaaca 41459485  T
Q  194 taaatggagcaaagatgaactcg 216  Q
    |||||||||||||||||||||||    
T  41459486 taaatggagcaaagatgaactcg 41459508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 7338767 - 7338867
Alignment:
Q  115 cttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaact 214  Q
    |||||||||| | || |||  ||| ||| |||||| ||| |||||||||||  ||||||  |||||||||||  |||||||||||||||||||||| |||    
T  7338767 cttttaatcacaaccattgattttattttttccacatgttacacatctatgacttgaaatggagtaaattgaggaaacataaatggagcaaagatggact 7338866  T
Q  215 c 215  Q
    |    
T  7338867 c 7338867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 46178120 - 46178230
Alignment:
Q  105 tatttctaatcttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagca 204  Q
    ||||| |||||||||||||  ||||||||  ||||||| | |||||||||| | ||||||||| |||| | | |||||| || |   |||||||||||||    
T  46178120 tatttttaatcttttaatctgagcctttgattttgtttttgccacgtgtcataaatctatgcagtgaacaggtgtaaatggagctctcataaatggagca 46178219  T
Q  205 aagatgaactc 215  Q
    |||||| ||||    
T  46178220 aagatgcactc 46178230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 40030495 - 40030599
Alignment:
Q  111 taatcttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatg 210  Q
    |||||||||||||  ||||||||||||| ||| |  || ||||||||||||||||||||||||| || |||||||| |||   |||||||||||||||||    
T  40030495 taatcttttaatctcagcctttggatttatttttgtcaagtgtcacacatctatgcattgaaaaggaataaattgagcaagagtaaatggagcaaagatg 40030594  T
Q  211 aactc 215  Q
    |||||    
T  40030595 aactc 40030599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 11519421 - 11519350
Alignment:
Q  144 ttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    |||||| |||||||||||||||  ||||||  | |||||||||| |||| ||||| ||||||||||||||||    
T  11519421 ttccacatgtcacacatctatgatttgaaatggggtaaattgaagaaacctaaattgagcaaagatgaactc 11519350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 42578812 - 42578709
Alignment:
Q  112 aatcttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatga 211  Q
    ||||||||||||  |||| |||  ||| ||| | |||| ||||| |||||||||  ||||||  | ||||||||| |||||||||||||||||||||||     
T  42578812 aatcttttaatctcagccattgattttatttttgccacatgtcatacatctatgacttgaaatggggtaaattgagcaaacataaatggagcaaagatgg 42578713  T
Q  212 actc 215  Q
    ||||    
T  42578712 actc 42578709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 20168982 - 20169082
Alignment:
Q  114 tcttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaac 213  Q
    |||||||||  |||||||| ||||| ||| | |||| ||||||| |||| || ||| |||| |||||||| || ||| ||||||||||||||||||| ||    
T  20168982 tcttttaattgtagcctttagattttttt-tgccacatgtcacatatctgtgaattaaaaaggagtaaatggagcaatcataaatggagcaaagatgcac 20169080  T
Q  214 tc 215  Q
    ||    
T  20169081 tc 20169082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 215
Target Start/End: Original strand, 13017742 - 13017852
Alignment:
Q  105 tatttctaatcttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagca 204  Q
    ||||| |||||||||||||  ||||||||  ||||||| | |||| ||||| | ||||||||| |||| | | |||||| || |   |||||||||||||    
T  13017742 tatttttaatcttttaatctgagcctttgattttgtttttgccacatgtcataaatctatgcagtgaacaggtgtaaatggagctctcataaatggagca 13017841  T
Q  205 aagatgaactc 215  Q
    |||||| ||||    
T  13017842 aagatgcactc 13017852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 6462647 - 6462684
Alignment:
Q  178 gtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  6462647 gtaaattgagcaaacataaatggagcaaagatggactc 6462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 13017156 - 13017084
Alignment:
Q  144 ttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactcg 216  Q
    |||||||||||| ||||||||||| |||| | | |||||| || |   ||||||||||||||||||| |||||    
T  13017156 ttccacgtgtcatacatctatgcagtgaacaggtgtaaatggagctctcataaatggagcaaagatgcactcg 13017084  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 31414144 - 31414076
Alignment:
Q  147 cacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    |||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||    
T  31414144 cacgtgtcacacatctatgcattgaaaatgagcaaatggagcaaacataaatggagcaaagatgaactc 31414076  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 17869733 - 17869644
Alignment:
Q  126 agcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    |||| |||||||| ||| | ||| ||||||  ||||||||||||||||| |||||||| || |||   ||||||||||||||||||||||    
T  17869733 agcccttggatttatttttaccatgtgtcatgcatctatgcattgaaaaggagtaaatggagcaaggctaaatggagcaaagatgaactc 17869644  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 27339772 - 27339715
Alignment:
Q  159 atctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactcg 216  Q
    |||||||||||| ||| |||||||| ||| ||   |||||||||||||||||||||||    
T  27339772 atctatgcattggaaatgagtaaatggaagaatactaaatggagcaaagatgaactcg 27339715  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 41327787 - 41327702
Alignment:
Q  130 tttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    ||||||||| ||| | |||  ||||||||||||||  |||||||| || |||||||| ||||  ||||||||| |||| |||||||    
T  41327787 tttggatttatttttaccatatgtcacacatctatttattgaaaaggaataaattgagcaaagctaaatggagtaaagttgaactc 41327702  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 215
Target Start/End: Original strand, 17273625 - 17273724
Alignment:
Q  116 ttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagag-taaattgaacaaacataaatggagcaaagatgaact 214  Q
    ||||||||  |||| ||| |||||||| | |||||||||| |||||||||| ||| ||  ||| |||||||| || || |||||||||||||||| ||||    
T  17273625 ttttaatctcagcccttgaatttgtttttgccacgtgtcatacatctatgctttggaat-gagataaattgagcacacttaaatggagcaaagataaact 17273723  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 27861019 - 27860987
Alignment:
Q  151 tgtcacacatctatgcattgaaaaagagtaaat 183  Q
    |||||||||||||||||||||||| ||||||||    
T  27861019 tgtcacacatctatgcattgaaaaggagtaaat 27860987  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 44096013 - 44096057
Alignment:
Q  171 aaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    |||||||||||||||||||| ||||||| ||| ||||||| ||||    
T  44096013 aaaaagagtaaattgaacaatcataaatagagtaaagatggactc 44096057  T

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Target: scaffold0098 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 215
Target Start/End: Complemental strand, 52348 - 52264
Alignment:
Q  131 ttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    |||||||||||| |  ||| |||||||||||||||||||||||| |||||||| ||  ||||| |||||||||||||||||||||    
T  52348 ttggatttgtttttaacacatgtcacacatctatgcattgaaaaggagtaaatggaggaaacaaaaatggagcaaagatgaactc 52264  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 33530668 - 33530762
Alignment:
Q  115 cttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagat 209  Q
    |||||||||  | ||||||||||| ||| | | | ||||||||||||||||||||||||| || ||||||||  ||   ||||||||||||||||    
T  33530668 cttttaatctcaacctttggatttatttttactatgtgtcacacatctatgcattgaaaaggaataaattgaggaaggctaaatggagcaaagat 33530762  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 2398221 - 2398321
Alignment:
Q  114 tcttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaac 213  Q
    ||||||||||  ||||||| |||||| || | |||| |||||||||||| |  | | |||||||||||||  | |||||| |||||||||||||||||||    
T  2398221 tcttttaatctcagcctttagatttgattttaccacatgtcacacatctgtaaact-aaaaagagtaaatgaagcaaacaaaaatggagcaaagatgaac 2398319  T
Q  214 tc 215  Q
    ||    
T  2398320 tc 2398321  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 31607346 - 31607255
Alignment:
Q  125 tagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactcg 216  Q
    ||||| |||||||| ||| ||||| ||||||   ||| |||||||||||| |||||||| ||  ||   |||||||||||||||||||||||    
T  31607346 tagcccttggatttattttttccatgtgtcatttatccatgcattgaaaaggagtaaatggaggaacgttaaatggagcaaagatgaactcg 31607255  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 40613145 - 40613055
Alignment:
Q  125 tagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    ||||| || ||||||||| |||||| ||||| ||||||||||||| |||| || ||||| ||  ||   ||||||||||||||||||||||    
T  40613145 tagccattagatttgttttttccacatgtcaaacatctatgcattcaaaaggattaaatggagtaaggttaaatggagcaaagatgaactc 40613055  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 44637768 - 44637833
Alignment:
Q  150 gtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    ||||||||||||||||  ||||||| |||||||| || || || || |||||||||||||||||||    
T  44637768 gtgtcacacatctatgtcttgaaaaggagtaaatggagcatacttagatggagcaaagatgaactc 44637833  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 3799931 - 3799832
Alignment:
Q  115 cttttaatcatagcctttggatttgtttgttccacgtgtcacacatctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaact 214  Q
    |||||||||  | ||||| ||||| ||| | ||| |||||||||||||||||||| |||  |  |||||||| ||| | ||||||||||||||||| |||    
T  3799931 cttttaatctcaacctttagatttatttttaccatgtgtcacacatctatgcattaaaatgggataaattgagcaagc-taaatggagcaaagatggact 3799833  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 44637047 - 44636976
Alignment:
Q  146 ccacgtgtcacacat--ctatgcattgaaaaagagtaaattgaacaaacataaatggagcaaagatgaactc 215  Q
    |||||||||||||||  ||||||||| |||| |||||||| ||  |||   |||||||||||||||||||||    
T  44637047 ccacgtgtcacacatatctatgcattaaaaaggagtaaatagagtaaagtaaaatggagcaaagatgaactc 44636976  T

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