View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_89 (Length: 247)
Name: NF2622_low_89
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 2930569 - 2930432
Alignment:
| Q |
1 |
aaatcggggtggtggttgattttagaaatgctataaaaaagtttgcaagtctattagaacgaaaggcattggaaacttcaattagccaaaaacatgttat |
100 |
Q |
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| T |
2930569 |
aaatcggggtggtggttgattatggaaatgctataaaaaagttttcaagtctctttgaacgaaaggcattggaaacttcaattaaccaaaaacatgttat |
2930470 |
T |
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| Q |
101 |
ctcatttctcaaatgtttcagacagctgaagggatctt |
138 |
Q |
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| T |
2930469 |
ctcatttctaaaatgttgcaggcagctggaggggtctt |
2930432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 3012201 - 3012334
Alignment:
| Q |
1 |
aaatcggggtggtggttgattttagaaatgctataaaaaagtttgcaagtctattagaacgaaaggcattggaaacttcaattagccaaaaacatgttat |
100 |
Q |
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||||||||||||||||||||||| |||||||||| ||||| ||||| ||||| || |||| |||||||| ||| ||||||||| |||| ||||||| || |
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| T |
3012201 |
aaatcggggtggtggttgattttggaaatgctatcaaaaaatttgctagtctgtttgaacaaaaggcatcagaagcttcaattaaccaacaacatgtcat |
3012300 |
T |
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| Q |
101 |
ctcatttctcaaatgtttcagacagctgaaggga |
134 |
Q |
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| T |
3012301 |
gtcatttctcaattgttgcaggctgctggaggga |
3012334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 2947175 - 2947083
Alignment:
| Q |
42 |
tttgcaagtctattagaacgaaaggcattggaaacttcaattagccaaaaacatgttatctcatttctcaaatgtttcagacagctgaaggga |
134 |
Q |
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| T |
2947175 |
tttgctagtctattcaaacaaaaggcatcagaaacctcaattaacccaacacatgttatctcatttctctcttgttacaggaagctgaaggga |
2947083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 110
Target Start/End: Original strand, 1506518 - 1506622
Alignment:
| Q |
6 |
ggggtggtggttgattttagaaatgctataaaaaagtttgcaagtctattagaacgaaaggcattggaaacttcaattagccaaaaacatgttatctcat |
105 |
Q |
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|||||| |||||||||||| |||| || ||||| ||| ||| ||||| |||| |||||||||||||| |||||||| | | ||||||| ||||||| |
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| T |
1506518 |
ggggtgctggttgattttaaggatgccatcaaaaaaattgaaaggctatttgaacaaaaggcattggaaaattcaattaacggacaacatgtcatctcat |
1506617 |
T |
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| Q |
106 |
ttctc |
110 |
Q |
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||||| |
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| T |
1506618 |
ttctc |
1506622 |
T |
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