View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_90 (Length: 247)
Name: NF2622_low_90
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_90 |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 6139058 - 6139142
Alignment:
| Q |
84 |
tatatcttgagttgtttcattattaggcaatagatttcaagatttatgaagtgaaataatcaacaagacaggaagatggatgggg |
168 |
Q |
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| T |
6139058 |
tatatcttgagttgtttcattattaggccatagatttcaagatttataaattgaaataatcaacaagacaggaagatggatgggg |
6139142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 6164373 - 6164457
Alignment:
| Q |
84 |
tatatcttgagttgtttcattattaggcaatagatttcaagatttatgaagtgaaataatcaacaagacaggaagatggatgggg |
168 |
Q |
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| T |
6164373 |
tatatcttgagttgtttcattattaggccattgatttcaagatttatgaagtgaaataatcaacaagacaggaggatggatgggg |
6164457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 13283042 - 13282953
Alignment:
| Q |
84 |
tatatcttgagttgtttcattattaggcaatagatttcaagatttatgaagtgaaa-----taatcaacaagacaggaagatggatgggg |
168 |
Q |
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| T |
13283042 |
tatatcttgagttgttttattattaggccatagatttcaagatttatgaagtgaaatggagtaatcaacaagacaggaagatggatgggg |
13282953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6138413 - 6138466
Alignment:
| Q |
1 |
ccatcagaaaaattagaaaagtgatctcaaatgcaaattattttatcgaaactt |
54 |
Q |
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| T |
6138413 |
ccatcagaaaaattaaaatagtgatcacaaatacaaattattttattgaaactt |
6138466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13284001 - 13283948
Alignment:
| Q |
1 |
ccatcagaaaaattagaaaagtgatctcaaatgcaaattattttatcgaaactt |
54 |
Q |
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| T |
13284001 |
ccatcagaaaaattaaaatagtgatcacaaatacaaattattttattgaaactt |
13283948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 13283296 - 13283261
Alignment:
| Q |
50 |
aacttgcattttcctttacagattaatccaaagtta |
85 |
Q |
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| T |
13283296 |
aacttgcattttcctttgcagattaatccaaagtta |
13283261 |
T |
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