View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_92 (Length: 246)
Name: NF2622_low_92
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_92 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 56240849 - 56240608
Alignment:
| Q |
1 |
ctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgatttctcttaggt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
56240849 |
ctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgatgtctcttaggt |
56240750 |
T |
|
| Q |
101 |
ccactagttctgccactaaggttctcctaaattcttactatgcattcattactcctctttcttacattttcatattccttatcnnnnnnnnnnnnnaatg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
56240749 |
ccactagttctgccactaaggttctcctaaattcttactatgcattcattactcctctttcttacattttcatattccttatcttttttcttgtttaatg |
56240650 |
T |
|
| Q |
201 |
tttcacagctcaacacagtcggtcttcaggagcacatacctg |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56240649 |
tttcacagctcaacacagtcggtcttcaggagcacatacctg |
56240608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 23947169 - 23947055
Alignment:
| Q |
1 |
ctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgatttctcttaggt |
100 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23947169 |
ctatctaatctaattcagctatctttctttagtcctgattgcaggatcaataaatctgccaacaaatcaatcaaaactcaaaggatgatgtctcttaggt |
23947070 |
T |
|
| Q |
101 |
ccactagttctgcca |
115 |
Q |
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|||| ||||| |||| |
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| T |
23947069 |
ccacaagttccgcca |
23947055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 16105775 - 16105889
Alignment:
| Q |
1 |
ctatctaatctaattctcctatctttctttagtcctcattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgatttctcttaggt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16105775 |
ctatctaatctaattcagctatctttctttagtcctgattgcaggatcaatcaatctgccaacaaatcaatcaaaactcaaaggatgatgtctcttaggt |
16105874 |
T |
|
| Q |
101 |
ccactagttctgcca |
115 |
Q |
| |
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|||| ||||| |||| |
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| T |
16105875 |
ccacaagttccgcca |
16105889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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