View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2622_low_98 (Length: 241)

Name: NF2622_low_98
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2622_low_98
NF2622_low_98
[»] chr5 (9 HSPs)
chr5 (4-151)||(13860209-13860356)
chr5 (4-151)||(90650-90797)
chr5 (4-151)||(11664519-11664666)
chr5 (4-151)||(13858049-13858196)
chr5 (25-151)||(40880366-40880492)
chr5 (26-142)||(27366115-27366231)
chr5 (4-76)||(6454292-6454364)
chr5 (101-151)||(36070663-36070713)
chr5 (23-75)||(5157517-5157569)
[»] chr4 (12 HSPs)
chr4 (4-151)||(42430926-42431073)
chr4 (4-149)||(40604050-40604195)
chr4 (7-139)||(4897628-4897760)
chr4 (4-151)||(36761925-36762068)
chr4 (4-151)||(22497717-22497864)
chr4 (62-151)||(4044701-4044790)
chr4 (11-108)||(32011098-32011195)
chr4 (4-113)||(49408857-49408966)
chr4 (63-151)||(42181072-42181160)
chr4 (8-75)||(3071555-3071622)
chr4 (93-151)||(32011209-32011265)
chr4 (84-144)||(3071165-3071225)
[»] chr2 (12 HSPs)
chr2 (4-151)||(14391636-14391783)
chr2 (4-151)||(29171323-29171470)
chr2 (4-148)||(14389850-14389994)
chr2 (10-151)||(9924377-9924519)
chr2 (4-151)||(5816515-5816665)
chr2 (25-151)||(41973778-41973905)
chr2 (4-119)||(5813299-5813413)
chr2 (28-151)||(17323314-17323427)
chr2 (68-127)||(35549648-35549707)
chr2 (106-151)||(5813239-5813284)
chr2 (111-151)||(9598008-9598048)
chr2 (119-151)||(28646450-28646482)
[»] chr1 (22 HSPs)
chr1 (4-151)||(10833546-10833693)
chr1 (4-151)||(3448816-3448963)
chr1 (4-151)||(29292736-29292882)
chr1 (4-151)||(10162938-10163085)
chr1 (4-151)||(36814184-36814331)
chr1 (4-151)||(11670805-11670953)
chr1 (11-149)||(13993532-13993668)
chr1 (4-151)||(11672414-11672561)
chr1 (4-151)||(36817329-36817477)
chr1 (23-116)||(12180992-12181085)
chr1 (7-151)||(4032944-4033094)
chr1 (4-116)||(12181274-12181386)
chr1 (4-147)||(35238771-35238907)
chr1 (3-151)||(11673909-11674054)
chr1 (62-143)||(19985646-19985726)
chr1 (17-151)||(19984152-19984283)
chr1 (67-151)||(19983415-19983500)
chr1 (17-143)||(19984896-19985017)
chr1 (68-151)||(13995759-13995845)
chr1 (68-151)||(14003873-14003959)
chr1 (4-72)||(21087801-21087869)
chr1 (4-51)||(12180769-12180816)
[»] chr6 (5 HSPs)
chr6 (4-128)||(35026020-35026144)
chr6 (4-151)||(1520253-1520400)
chr6 (7-151)||(2512541-2512685)
chr6 (4-151)||(7300543-7300696)
chr6 (4-42)||(7300263-7300301)
[»] chr7 (14 HSPs)
chr7 (4-151)||(41397531-41397678)
chr7 (11-151)||(22130337-22130477)
chr7 (11-151)||(40500629-40500769)
chr7 (4-146)||(30879296-30879438)
chr7 (4-149)||(48572544-48572688)
chr7 (4-127)||(22112090-22112213)
chr7 (4-127)||(40494238-40494361)
chr7 (44-149)||(26199070-26199175)
chr7 (82-151)||(48015159-48015228)
chr7 (96-151)||(48013448-48013503)
chr7 (11-124)||(46950038-46950148)
chr7 (90-150)||(40496546-40496606)
chr7 (122-151)||(22112040-22112069)
chr7 (122-151)||(40494382-40494411)
[»] chr8 (11 HSPs)
chr8 (4-143)||(7302825-7302964)
chr8 (4-151)||(38064210-38064357)
chr8 (4-138)||(13014589-13014723)
chr8 (4-138)||(26228658-26228792)
chr8 (4-151)||(7305352-7305497)
chr8 (18-91)||(13012925-13012998)
chr8 (57-143)||(39546799-39546885)
chr8 (4-65)||(39544863-39544924)
chr8 (61-149)||(1028048-1028136)
chr8 (11-71)||(10604264-10604324)
chr8 (106-151)||(13012881-13012926)
[»] chr3 (6 HSPs)
chr3 (11-149)||(3964819-3964955)
chr3 (4-151)||(49089678-49089825)
chr3 (13-143)||(34618719-34618849)
chr3 (68-151)||(3956690-3956773)
chr3 (11-151)||(45610021-45610161)
chr3 (33-144)||(26224523-26224634)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 13860209 - 13860356
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||  ||||||||||||||||||||||||    
T  13860209 ttgttctaaatatattaagacaagtagtgtgtaatcaaagtttgtaaaagtaaaccattaatttatatttgtataatttcaatattattttgttatttta 13860308  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
     |||||||||||||||||||||||| | ||||||||||||||||||||    
T  13860309 tgatctctaacaattggtaaataatatctatattaaatattattttca 13860356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 90797 - 90650
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||    
T  90797 ttgttttaaatatattaagacaagtagtgtgtaatcaaaggttgtaaaagtaaaaaattaatttatatttgtattatttccatattattttgttatttta 90698  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    | || |||||||||||||||||||| | ||||||||||||||||||||    
T  90697 aaatttctaacaattggtaaataatgtctatattaaatattattttca 90650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 11664666 - 11664519
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||| |||||||||||  ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  11664666 ttgttttaaatatattaggacaagtagtatgtaatcaaagtttgtgaaagtaaaaaattaatttatatttgtagcatttcaatattattttgttatttta 11664567  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||||||||| |||||||| | ||||||||||||||||||||    
T  11664566 agatctctaacaattgataaataatgtctatattaaatattattttca 11664519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 13858196 - 13858049
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  13858196 ttgttttaaatatattaagacaagtagtgtgtaataaaagtttgtaaaagtaaaacattaatttatatttgtataatttcaatattattttgttatttta 13858097  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
     |||||||||||||||||||||||| | ||||| |||||| |||||||    
T  13858096 tgatctctaacaattggtaaataatatctatatgaaatatcattttca 13858049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 40880366 - 40880492
Alignment:
Q  25 aagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaa 124  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||    
T  40880366 aagtagtgtgtaatcaaagtttataaaagtacaaaattaatttatatttgtatcatttcaatattattttgttattttataatctctaacaatcggtaaa 40880465  T
Q  125 taatttatatattaaatattattttca 151  Q
    |||| | ||||||||||||||||||||    
T  40880466 taatatctatattaaatattattttca 40880492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 27366231 - 27366115
Alignment:
Q  26 agtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaat 125  Q
    ||||||||||||| ||| ||| ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||| |||||    
T  27366231 agtagtgtgtaataaaattttataaaagtaaaatattaatttatatttgtatcatttgaatattattttgttattttatgatctctaaaaattgataaat 27366132  T
Q  126 aatttatatattaaata 142  Q
    ||| | |||||||||||    
T  27366131 aatgtctatattaaata 27366115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 6454364 - 6454292
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgta 76  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||  |||||||| |||||    
T  6454364 ttgttctaaatatattaagacaagtagtgtgtaattaaaatttgtaaaagtaaaaaaaaaatttatacttgta 6454292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 36070713 - 36070663
Alignment:
Q  101 ttaagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    ||||| ||||| |||||||||||||||| | ||||||||||||||||||||    
T  36070713 ttaagttctctgacaattggtaaataatgtctatattaaatattattttca 36070663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 5157517 - 5157569
Alignment:
Q  23 acaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgt 75  Q
    |||||||||||||||||||| |||| ||||  |||||| ||||||| ||||||    
T  5157517 acaagtagtgtgtaatcaaattttgcaaaaacaaaaaagtaatttacatttgt 5157569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 42430926 - 42431073
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  42430926 ttgttctaaatatattaggacaagtagtgtgtaatcaaagtttgtaaaagtacaaaattaatttatatttgtattatttcaatattattttgttatttta 42431025  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    | ||||||||||||||||||||||| |||||||||||| |||||||||    
T  42431026 atatctctaacaattggtaaataatatatatattaaattttattttca 42431073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 40604050 - 40604195
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40604050 ttgttctaaatatattaagacaattagtgtgtaattaaaatttgtaaaagtaaaaaattaatttatatttgtatcatttcaatattattttgttatttta 40604149  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattatttt 149  Q
      ||||||||||||||||| ||||| | ||||||||||||||||||    
T  40604150 taatctctaacaattggtagataatatctatattaaatattatttt 40604195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 4897628 - 4897760
Alignment:
Q  7 ttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaaga 106  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| | |    
T  4897628 ttctaaatatattaagacaagtagtgtgtaatcaaagtttgtaaaagtaagaaattaatttatatttgtatcatttgaatattattttgttatttttaaa 4897727  T
Q  107 tctctaacaattggtaaataatttatatattaa 139  Q
    | |||||||||||||||| ||| | ||||||||    
T  4897728 tttctaacaattggtaaacaatgtctatattaa 4897760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 36761925 - 36762068
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||||||| |||||||| | |||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  36761925 ttgttctaattatattaagataagtagtgtgtaatcaaaatttgtaaaaataaaaaactaatttatatttgtatcatttcaatattattttgttatttta 36762024  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
     ||| ||||| ||||  |||||||  ||||||||||||||||||||||    
T  36762025 tgatatctaataatt--taaataa--tatatattaaatattattttca 36762068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 22497864 - 22497717
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| ||||||||| ||||||||||||||  ||||| |||||||||||||| |||| |||| || |||||||||||||||| || |    
T  22497864 ttgttctaaatatattaagacaagtagtctgtaatcaaagtttaaaaaaggaaaaaattaatttacatttatatcattacaatattattttgttacttga 22497765  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||||||||| | |||||| |  |||||||||||||||||||    
T  22497764 agatctctaacaattgatcaataatgtcaatattaaatattattttca 22497717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 4044790 - 4044701
Alignment:
Q  62 taatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| | ||||||||||||||||||||    
T  4044790 taatttatatttgtatcatttcaatattattttgttattataagatctctaacaattgataaataatatctatattaaatattattttca 4044701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 32011098 - 32011195
Alignment:
Q  11 aaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatc 108  Q
    ||||||||||| |||| |||||||| | ||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  32011098 aaatatattaacacaaatagtgtgtgaacaaagttcgtaaaagtaaaaaattaatttatatttgtattagttcaatattattttgttattttaagatc 32011195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 49408857 - 49408966
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| | ||  ||||| |||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||||| |    
T  49408857 ttgttctaaatatattaagaaaatgagtgtataatcaaagtttgtaaaaataaaaaattaatttatatttatatcatttcaatattattttattatttca 49408956  T
Q  104 agatctctaa 113  Q
     |||||||||    
T  49408957 cgatctctaa 49408966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 42181072 - 42181160
Alignment:
Q  63 aatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||||||||  | |||||||||||||||||||||| ||||||||||||||| |||||||  | ||||||||||||||||||||    
T  42181072 aatttatatttgtataatctcaatattattttgttattttatgatctctaacaattgataaataacgtctatattaaatattattttca 42181160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 3071622 - 3071555
Alignment:
Q  8 tctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgt 75  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||    
T  3071622 tctaaatatattaagacaagtaatgtgtaatccaagtttgtaaaagttaaaaattaatttatatttgt 3071555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 32011209 - 32011265
Alignment:
Q  93 ttgttattttaagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||||||||||  ||||||||||||||||| | ||||||||||||||||||||    
T  32011209 ttgttattttaagatct--aacaattggtaaataatgtttatattaaatattattttca 32011265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 3071225 - 3071165
Alignment:
Q  84 aatattattttgttattttaagatctctaacaattggtaaataatttatatattaaatatt 144  Q
    |||||||||| ||||||||||||||| ||| |||||||||||| | | |||||||||||||    
T  3071225 aatattatttagttattttaagatctttaaaaattggtaaatattgtctatattaaatatt 3071165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 14391636 - 14391783
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  14391636 ttgttctaaatatattaagacaagtggtgtgtaattaaaatttgtaaaagtaaaaaactaatttatatttgtatcatttcaatattattttgttatttta 14391735  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
     |||||||||||||||||||||||| | ||||||||||||||||||||    
T  14391736 tgatctctaacaattggtaaataatatctatattaaatattattttca 14391783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 29171470 - 29171323
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||||||||||||  ||||||||||||||||||||||||    
T  29171470 ttgttttaaatatattaagacaagttgtgtgtaatcaaagtttgtaaaagtaaaacaataatttatatttgtattatttcaatattattttgttatttta 29171371  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||    
T  29171370 agatttctaacaattggtaaataatgtctatattaaatattattttca 29171323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 14389850 - 14389994
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| || ||||||| |||||||||||||    
T  14389850 ttgttctaaatatattaagacaagtagtgtgtaattaaaatttgtaaaagtaaaaaattaatttatatctgtatcattccaatattgttttgttatttta 14389949  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattt 148  Q
     ||||||| |||||||||||||||| | |||||||||||||||||    
T  14389950 tgatctcttacaattggtaaataatgtctatattaaatattattt 14389994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 9924377 - 9924519
Alignment:
Q  10 taaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaa-aattaatttatatttgtatcctttcaatattattttgttattttaagatc 108  Q
    ||||||||| || ||||||| ||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  9924377 taaatatatcaagacaagtattgtgtgatcaaagtttgtaaaagtaaaaaaattaattcatatttgtatcatttcaatattattttgttattttaagatc 9924476  T
Q  109 tctaacaattggtaaataatttatatattaaatattattttca 151  Q
    || ||||||||||||||||| | ||||||||||||| ||||||    
T  9924477 tcaaacaattggtaaataatgtctatattaaatattgttttca 9924519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 5816515 - 5816665
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||  ||||| | |    
T  5816515 ttgttctaaatatatcaagataagtagtgtgtaatcaaagtgtgtaaaagtaaaaaattaatttatattagtatcatttcaatattattcagttatataa 5816614  T
Q  104 agatctctaacaattggtaaataa--tttatatatt-aaatattattttca 151  Q
    | |||||||||||||| |||||||  | |||||||| ||||||||||||||    
T  5816615 aaatctctaacaattgataaataatgtctatatattaaaatattattttca 5816665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 41973778 - 41973905
Alignment:
Q  25 aagtagtgtgtaatcaaagtttgtaaaagtaaaa-aattaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaa 123  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||| | |||  |||||||||||||||| ||||||||||| |||||||||||||||    
T  41973778 aagtagtgtgtaatcaaagtttgtaaaaataaaaaaattaatttatatctatattatttcaatattattttgctattttaagatttctaacaattggtaa 41973877  T
Q  124 ataatttatatattaaatattattttca 151  Q
    ||||| | |||| |||||||||||||||    
T  41973878 ataatgtttatactaaatattattttca 41973905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 5813413 - 5813299
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||||||||||||| || | | |||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||||    
T  5813413 ttgttctaaatatatcaagataggtagtgtgtaataaaagtttgtaaaagtaaaaaattaa-ttatatttgtatcattttaatattattatgttatttta 5813315  T
Q  104 agatctctaacaattg 119  Q
    | ||| ||||||||||    
T  5813314 aaatcactaacaattg 5813299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 17323427 - 17323314
Alignment:
Q  28 tagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataa 127  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||||||  | |||||||||| ||||||||||    |||     |||||||||||||    
T  17323427 tagtgtgtaatcaaa-tttgaaaaagtaaaaaaataatttatatttgtattatatcaatattatcttgttatttt----tct-----aattggtaaataa 17323338  T
Q  128 tttatatattaaatattattttca 151  Q
    | | ||||||||||||||||||||    
T  17323337 tgtctatattaaatattattttca 17323314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 35549707 - 35549648
Alignment:
Q  68 atatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataa 127  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  35549707 atatttgtatcttttcaatattattttgttatcttatgatctctaacaattgataaataa 35549648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 5813284 - 5813239
Alignment:
Q  106 atctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    ||||||||||||| ||||||||| | ||||||||||||||||||||    
T  5813284 atctctaacaatttgtaaataatgtctatattaaatattattttca 5813239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Original strand, 9598008 - 9598048
Alignment:
Q  111 taacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||||||||||  | ||||||||||||||||||||    
T  9598008 taacaattggtaaataacgtttatattaaatattattttca 9598048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Original strand, 28646450 - 28646482
Alignment:
Q  119 ggtaaataatttatatattaaatattattttca 151  Q
    |||||||||| ||||||||||||||||||||||    
T  28646450 ggtaaataatgtatatattaaatattattttca 28646482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 10833546 - 10833693
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||    
T  10833546 ttgttttaaatatattaagacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaaataatttatatttgtattatttcaatattattttgttatttta 10833645  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||| ||||||||||| |||||||| | ||||||||||||||||||||    
T  10833646 agatttctaacaattgataaataatgtttatattaaatattattttca 10833693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 3448963 - 3448816
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||||||| |||||||||    
T  3448963 ttgttctaaatatattaagacaagtaatgtgtaatcagagtttgtaaaaataaaaaattaatttatatttgtatcatttcaaaattatttggttatttta 3448864  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||    
T  3448863 agatatctaacaattggtaaataatatctatattaaatattattttca 3448816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 29292736 - 29292882
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| ||| |||||||||||  ||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  29292736 ttgttctaaatatattaagacaggtagtgtgtaaataaaatttgtaaaagtaaaa-attaatttatatttgtatcatttcaatattattttgttatttta 29292834  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||    
T  29292835 tgatctctaacaattggtaaataatttctatattaaatattattttca 29292882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 10162938 - 10163085
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  10162938 ttgttttaaatatattaagagaagtagtgtctaatcaaagtttgtaaaagtaaaaaattaatttatatttgttttatttcaatattattttgttatttta 10163037  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||| |||||| |||||| |||||| | ||||||||||||||||||||    
T  10163038 agatttctaactattggtgaataatgtttatattaaatattattttca 10163085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 36814184 - 36814331
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||| | || |||||||||||||||||||||||||| |||||| | ||||||| ||||||||| ||| ||||||||||| ||||||||    
T  36814184 ttgttctaaatatattcagacgagtagtgtgtaatcaaagtttgtaaacgtaaaatactaatttacatttgtatcatttaaatattatttttttatttta 36814283  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  36814284 agatctctaacaattggtaaataatgtctatattaaatattattttca 36814331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 11670953 - 11670805
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaat-taatttatatttgtatcctttcaatattattttgttatttt 102  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  |||||||||||| |||| |||||||||||||||||||||||    
T  11670953 ttgttctaaatatattaggacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaaaataatttatatttatatcatttcaatattattttgttatttt 11670854  T
Q  103 aagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    ||||||| || |||||| |||||||| | ||||| ||||||||||||||    
T  11670853 aagatctatagcaattgataaataatgtttatatgaaatattattttca 11670805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 13993668 - 13993532
Alignment:
Q  11 aaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctc 110  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||  ||||||||||| ||||||||| ||||  ||    
T  13993668 aaatatattaagacaaatagtgtgtaatcaaagtttgtaaaaataaaaaattaatttatatttatatcaattcaatattatcttgttatttcaaga--tc 13993571  T
Q  111 taacaattggtaaataatttatatattaaatattatttt 149  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  13993570 taacaattggtaaataatgtatatattaaatattatttt 13993532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 11672561 - 11672414
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaat-taatttatatttgtatcctttcaatattattttgttatttt 102  Q
    ||||||| |||||||||  |||| |||||||||||||||||||||||||||||||||  |||||||||||| | || || ||||||||||||||||||||    
T  11672561 ttgttctgaatatattaggacaaatagtgtgtaatcaaagtttgtaaaagtaaaaaaaataatttatatttatgtcatt-caatattattttgttatttt 11672463  T
Q  103 aagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||||||||||||||||||| | ||||| ||||||||||||||    
T  11672462 aagatctctaacaattggtaaataatgtctatatgaaatattattttca 11672414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 36817329 - 36817477
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattt-tgttatttt 102  Q
    |||||||||||||||||| ||  ||||||||||||||||||||||||| ||||| |||||||||| |||||||||  ||||||||| ||| | |||||||    
T  36817329 ttgttctaaatatattaagacgggtagtgtgtaatcaaagtttgtaaatgtaaataattaatttacatttgtatcaattcaatattttttattttatttt 36817428  T
Q  103 aagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    ||||||||||||||| |||||||||| | || ||||||||| |||||||    
T  36817429 aagatctctaacaatcggtaaataatgtctacattaaatatcattttca 36817477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 12181085 - 12180992
Alignment:
Q  23 acaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaa 116  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  12181085 acaagtggtgtgtaatcaaagtttgtaaaagtaaaaatttaatttatatttgtattatttcaatattattttgttattttaagatctctaacaa 12180992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 4033094 - 4032944
Alignment:
Q  7 ttctaaatatattaaaacaagtagtgtgtaatca-------aagttt-gtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgtta 98  Q
    ||||||||||||||| ||||||||||||||||||       |||||| ||||| |||||||||||||||| ||||||||| ||||||||||||||| |||    
T  4033094 ttctaaatatattaagacaagtagtgtgtaatcactaatcaaagttttgtaaacgtaaaaaattaatttacatttgtatcatttcaatattattttttta 4032995  T
Q  99 ttttaagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||| ||||||||||||||||||||  | ||||||||||||||| ||||    
T  4032994 ttttaagacctctaacaattggtaaataa--tgtatattaaatattatcttca 4032944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 12181386 - 12181274
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaa-gtaaaaaatta-atttatatttgtatcctttcaatattattttgttattt 101  Q
    |||||||||||||||||| |||||| ||||||||||||||||| ||||| ||||||| ||| ||||||||||  ||| ||||||||||||||||||||||    
T  12181386 ttgttctaaatatattaagacaagtggtgtgtaatcaaagtttctaaaaagtaaaaatttatatttatattt--atcatttcaatattattttgttattt 12181289  T
Q  102 taagatctctaacaa 116  Q
    |||||||||||||||    
T  12181288 taagatctctaacaa 12181274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 35238907 - 35238771
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||||||||||||||||     | |||||||||| ||| |||||||||   |||||||||||||||||||| || ||||||||||||||||||||||||    
T  35238907 ttgttctaaatatattaa-----gcagtgtgtaattaaaatttgtaaaat--aaaaattaatttatatttgtgtcatttcaatattattttgttatttta 35238815  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattatt 147  Q
     | ||||||||||||| |||||||| | || |||||||||||||    
T  35238814 tggtctctaacaattgataaataatgtctacattaaatattatt 35238771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 151
Target Start/End: Complemental strand, 11674054 - 11673909
Alignment:
Q  3 tttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttt 102  Q
    |||||| | |||||||||  |||| |||| |||||||||| ||| ||| ||||||| ||||||||||||||||||| |  |||| |||||||||||||||    
T  11674054 tttgttttgaatatattaggacaaatagtatgtaatcaaa-tttctaagagtaaaatattaatttatatttgtatcataccaatcttattttgttatttt 11673956  T
Q  103 aagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||| |||||| |||||||||||| | |||||| |||||||||||||    
T  11673955 aagatc-ctaacagttggtaaataatgtttatatt-aatattattttca 11673909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 19985726 - 19985646
Alignment:
Q  62 taatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataatttatatattaaatat 143  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |||||| | ||||||||||||    
T  19985726 taatttatatttgtatcatttcaatattattcttttattttaagatctctaacaattggt-aataatgtctatattaaatat 19985646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 19984283 - 19984152
Alignment:
Q  17 attaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaa 116  Q
    ||||| |||||||||| ||||||||| |||  ||||| |||| | ||||||||||||||||| |||||| |||||| | ||| |||||||||||||| ||    
T  19984283 attaagacaagtagtg-gtaatcaaaattta-aaaagaaaaataataatttatatttgtatcatttcaaaattattcttttaatttaagatctctaagaa 19984186  T
Q  117 ttggtaaataatttatatattaaatattattttca 151  Q
    ||||| |||||  | ||||||||||||||||||||    
T  19984185 ttggt-aataaagtctatattaaatattattttca 19984152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 151
Target Start/End: Complemental strand, 19983500 - 19983415
Alignment:
Q  67 tatatttgtatcctttcaatattattttgttattttaagat--ctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||||| ||||||||||||| | ||||||||||||  |||||||||||||| |||||| | ||||||||||||||||||||    
T  19983500 tatatttgtatcatttcaatattattcttttattttaagatctctctaacaattggt-aataatgtctatattaaatattattttca 19983415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 19985017 - 19984896
Alignment:
Q  17 attaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaa 116  Q
    ||||| |||||||||| ||||||||| |||  ||||| ||||||| |  ||||||||||||| ||||||||||||  | |||||||||||||||||||||    
T  19985017 attaagacaagtagtg-gtaatcaaaattta-aaaagaaaaaaataa--ttatatttgtatcatttcaatattatacttttattttaagatctctaacaa 19984922  T
Q  117 ttggtaaataatttatatattaaatat 143  Q
    ||||| |||||| | ||||||||||||    
T  19984921 ttggt-aataatgtctatattaaatat 19984896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 13995759 - 13995845
Alignment:
Q  68 atatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataatt---tatatattaaatattattttca 151  Q
    ||||||||||| ||||||||| |||||||||||||| || ||| ||||||||||||||||||   | ||||| ||||||||||||||    
T  13995759 atatttgtatcatttcaatatgattttgttattttatgacctccaacaattggtaaataattatgtctatatcaaatattattttca 13995845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 14003873 - 14003959
Alignment:
Q  68 atatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataatt---tatatattaaatattattttca 151  Q
    ||||||||||| ||||||||| |||||||||||||| || ||| ||||||||||||||||||   | ||||| ||||||||||||||    
T  14003873 atatttgtatcatttcaatatgattttgttattttatgacctccaacaattggtaaataattatgtctatatcaaatattattttca 14003959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 21087801 - 21087869
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatt 72  Q
    |||||||||||||||||| |||  |||||||||||||||||||  |||   ||||||||||||||||||    
T  21087801 ttgttctaaatatattaagacatctagtgtgtaatcaaagtttaaaaagaaaaaaaattaatttatatt 21087869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 12180816 - 12180769
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaa 51  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||||    
T  12180816 ttgttctaaatatattaagacaagtagtatataatcaaagtttgtaaa 12180769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 35026144 - 35026020
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35026144 ttgttctaaatatattaggacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcatttcaatattattttgttatttta 35026045  T
Q  104 agatctctaacaattggtaaataat 128  Q
    ||||||||||||||| |||||||||    
T  35026044 agatctctaacaattagtaaataat 35026020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 1520400 - 1520253
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| ||||||| ||||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1520400 ttgttctaaatatattaagacaagtaatgtgtgattaaaatttgtaaaagtaaaaaattaatttatatttgtatcatttcaatattattttgttatttta 1520301  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
     ||||||||||||||  |||||||| | ||||||||||||||||||||    
T  1520300 tgatctctaacaattaataaataatgtctatattaaatattattttca 1520253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 2512685 - 2512541
Alignment:
Q  7 ttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaaga 106  Q
    ||||||||||||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||    
T  2512685 ttctaaatatattaagataagtagtgtataattaaagtttgtaaaagtaaaaaattaatttatatttgtatcattttaatattattttgttattttatga 2512586  T
Q  107 tctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    | | ||||||||| |||||||| | ||||||||||||||||||||    
T  2512585 tttttaacaattgataaataatgtctatattaaatattattttca 2512541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 7300696 - 7300543
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatattt------gtatcctttcaatattattttgtt 97  Q
    ||||| |||||||||||| | |||||||||||| ||||||||||||||||||||||||| ||||||||||      ||||  ||||||||||||||||||    
T  7300696 ttgttttaaatatattaagataagtagtgtgtattcaaagtttgtaaaagtaaaaaattcatttatatttatatttgtattatttcaatattattttgtt 7300597  T
Q  98 attttaagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||| | |||||||||||||||| | | ||||||||||||||||||||    
T  7300596 attttaagatttttaacaattggtaaatagtgtctatattaaatattattttca 7300543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 7300301 - 7300263
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaa 42  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  7300301 ttgttttaaatatattaagacaagtagtgtgtaatcaaa 7300263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 41397678 - 41397531
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  41397678 ttgttctaaatatattaagacaagtagtgtgtaaccaaattttgtaaaagttaaacattaatttatatttgtatgatttcaatattattttgttatttta 41397579  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
     |||||||||||||||||||||||| | ||||||||||||||||||||    
T  41397578 tgatctctaacaattggtaaataatgtctatattaaatattattttca 41397531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 22130477 - 22130337
Alignment:
Q  11 aaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctc 110  Q
    ||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||     
T  22130477 aaatatattaagacaagtaacatgtaatcaaagtttgtaaaagtaaaaaattaatttatatttatatcatttcaatattattttgttattttaagatcta 22130378  T
Q  111 taacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||||||||||| | ||| ||||||||||||||||    
T  22130377 taacaattggtaaataatgtctatgttaaatattattttca 22130337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 40500629 - 40500769
Alignment:
Q  11 aaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctc 110  Q
    ||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||     
T  40500629 aaatatattaagacaagtaacatgtaatcaaagtttgtaaaagtaaaaaattaatttatatttatatcatttcaatattattttgttattttaagatcta 40500728  T
Q  111 taacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||||||||||| | ||| ||||||||||||||||    
T  40500729 taacaattggtaaataatgtctatgttaaatattattttca 40500769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 146
Target Start/End: Complemental strand, 30879438 - 30879296
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||    
T  30879438 ttgttctaaatatattaagacaagtaatgtgtaataaaaatttgtaaaagtaaaaaattaatttatatttttatcattttaatattattttataatttta 30879339  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattat 146  Q
    | |||||||||||||| |||||||| | |||||||||||||||    
T  30879338 atatctctaacaattgataaataatgtttatattaaatattat 30879296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 48572688 - 48572544
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||| |||| |||| ||||||||||||||| ||||||||    
T  48572688 ttgttctaaatatattaagacaattagtgtgtaatcaaagtttgtaaacataaaaaattaatttacatttatatcatttcaatattatttt-ttatttta 48572590  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattatttt 149  Q
    |||| ||||||  |||||||||||||| | ||||||||||||||||    
T  48572589 agatttctaacggttggtaaataatttttgtattaaatattatttt 48572544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 22112213 - 22112090
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  22112213 ttgttctaaatatattaagataaatagtgtgtaattaaagtttgtaaaagtaaaaaattaatttatatttgaatcatttcaatattattttgttatttta 22112114  T
Q  104 agatctctaacaattggtaaataa 127  Q
    |||||  ||| ||||| |||||||    
T  22112113 agatccgtaataattgataaataa 22112090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 40494238 - 40494361
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  40494238 ttgttctaaatatattaagataaatagtgtgtaattaaagtttgtaaaagtaaaaaattaatttatatttgaatcatttcaatattattttgttatttta 40494337  T
Q  104 agatctctaacaattggtaaataa 127  Q
    |||||  ||| ||||| |||||||    
T  40494338 agatccgtaataattgataaataa 40494361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 26199070 - 26199175
Alignment:
Q  44 tttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataatttatatattaaatat 143  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  26199070 tttgtaaaagtaaaacattaatttatatttgtatcatttcaatattattttgttattttatgatctctaacaattggtaaataatgtctatattaaatat 26199169  T
Q  144 tatttt 149  Q
     |||||    
T  26199170 gatttt 26199175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 48015228 - 48015159
Alignment:
Q  82 tcaatattattttgttattttaagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  48015228 tcaatattattttgttaatttaagatctctaacaattggtaaataatgtatatattatatattattttca 48015159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 48013503 - 48013448
Alignment:
Q  96 ttattttaagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  48013503 ttattttatgatctctaacaattggtaaataatgtatatattaaatattattttca 48013448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 46950038 - 46950148
Alignment:
Q  11 aaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctc 110  Q
    ||||||||||| ||| |||||||| ||||||| | | ||| ||||||| |||||||||||||||||||  |||||| ||||||||  |||||| ||  ||    
T  46950038 aaatatattaagacaggtagtgtggaatcaaaatatctaatagtaaaa-attaatttatatttgtatcacttcaattttattttgcgattttatga--tc 46950134  T
Q  111 taacaattggtaaa 124  Q
    ||||||||||||||    
T  46950135 taacaattggtaaa 46950148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 40496546 - 40496606
Alignment:
Q  90 attttgttattttaagatctctaacaattggtaaataatttatatattaaatattattttc 150  Q
    |||||||||||||||||||| ||| |||||||||||||| |  ||||||||||||||||||    
T  40496546 attttgttattttaagatctataataattggtaaataatgtccatattaaatattattttc 40496606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 151
Target Start/End: Complemental strand, 22112069 - 22112040
Alignment:
Q  122 aaataatttatatattaaatattattttca 151  Q
    ||||||||||||||||||||||||||||||    
T  22112069 aaataatttatatattaaatattattttca 22112040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 40494382 - 40494411
Alignment:
Q  122 aaataatttatatattaaatattattttca 151  Q
    ||||||||||||||||||||||||||||||    
T  40494382 aaataatttatatattaaatattattttca 40494411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 7302964 - 7302825
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| |||| ||||||||||| ||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7302964 ttgttctaaatatattaagacaattagtgtgtaattaaaatttgtaaacgtaaaaaattaatttatatttttatcatttcaatattattttgttatttta 7302865  T
Q  104 agatctctaacaattggtaaataatttatatattaaatat 143  Q
     |||||||||||||||||||||||| | ||||||||||||    
T  7302864 tgatctctaacaattggtaaataatatctatattaaatat 7302825  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 38064357 - 38064210
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||    
T  38064357 ttgttttaaatatattaagacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtattatttcaatattattttattatttta 38064258  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    | || | ||||||||| ||||||||   |||||||| |||||||||||    
T  38064257 atatttttaacaattgataaataatgactatattaactattattttca 38064210  T

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Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 13014723 - 13014589
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| | || ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||    
T  13014723 ttgttctaaatatattaagataaatagtgtgtaattaaagtttgtaaaagtaacaaattaatttatatttgtatcatttcaatattattttgttctttta 13014624  T
Q  104 agatctctaacaattggtaaataatttatatatta 138  Q
    ||||||| ||||||||||||||||| | |||||||    
T  13014623 agatctcaaacaattggtaaataatatctatatta 13014589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 26228658 - 26228792
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  26228658 ttgttctaaatatgttaagacaggtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcattttaatattattttgttatttta 26228757  T
Q  104 agatctctaacaattggtaaataatttatatatta 138  Q
    |||| || |||||||| |||||||| | |||||||    
T  26228758 agatttccaacaattgataaataatgtctatatta 26228792  T

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Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 7305497 - 7305352
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    ||||| |||||||||||| |||| || |||||| | ||| |||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||||    
T  7305497 ttgttataaatatattaagacaattaatgtgtagttaaaatttgtaaaagtaaaaaattaatttatatttttatcatttcaatatta--ttgttatttta 7305400  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
     |||||||||||||||||||||||| | ||||||||||||||||||||    
T  7305399 tgatctctaacaattggtaaataatgtctatattaaatattattttca 7305352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 13012998 - 13012925
Alignment:
Q  18 ttaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattat 91  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  13012998 ttaagacaaatagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttatatcatttcaatattat 13012925  T

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Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 39546799 - 39546885
Alignment:
Q  57 aaaattaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataatttatatattaaatat 143  Q
    |||| ||||||||||||||||| |||||||||||| || ||||||||||||||||| ||||| ||||||||| | ||||||||||||    
T  39546799 aaaaataatttatatttgtatcatttcaatattatattattattttaagatctctaccaattagtaaataatgtctatattaaatat 39546885  T

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Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 39544863 - 39544924
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaat 65  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||    
T  39544863 ttgttctaaatatattaaaacaagtggtgtataatcaaagtttgtaaaagtaaaaaaataat 39544924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 1028136 - 1028048
Alignment:
Q  61 ttaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataatttatatattaaatattatttt 149  Q
    |||||||||||||||||  |||||||||||||||||||||||| ||||| | | ||||| |||||||| | ||||||||| ||||||||    
T  1028136 ttaatttatatttgtataatttcaatattattttgttattttatgatcttttaaaattgataaataatgtctatattaaacattatttt 1028048  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 10604264 - 10604324
Alignment:
Q  11 aaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatat 71  Q
    ||||||||||| ||| |||||||| |||||||||||| ||||||| |||| ||||||||||    
T  10604264 aaatatattaagacaggtagtgtgcaatcaaagtttgcaaaagtataaaagtaatttatat 10604324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 13012926 - 13012881
Alignment:
Q  106 atctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||||||||||||| |||||||| | ||||||||||||||||||||    
T  13012926 atctctaacaattgataaataatgtctatattaaatattattttca 13012881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 3964819 - 3964955
Alignment:
Q  11 aaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctc 110  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||| ||||||||| ||||  ||    
T  3964819 aaatatattaagacaagtagtgtgtaatcaaagtttgtaaaaataaaaaattaatttatatttgtatcaattcaatattatcttgttatttcaaga--tc 3964916  T
Q  111 taacaattggtaaataatttatatattaaatattatttt 149  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  3964917 taacaattggtaaataatgtatatattaaatattatttt 3964955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 4 - 151
Target Start/End: Original strand, 49089678 - 49089825
Alignment:
Q  4 ttgttctaaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttatttta 103  Q
    |||||||||||||||||| |||||| |||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49089678 ttgttctaaatatattaagacaagtggtgtgtaatcaacgttcgtaaaattaaaaaattaatttatatttgtatcatttcaatattattttgttatttta 49089777  T
Q  104 agatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    | |||||||| |||| ||| ||||| | ||||||||||||||||||||    
T  49089778 aaatctctaataattagtatataatgtttatattaaatattattttca 49089825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 34618849 - 34618719
Alignment:
Q  13 atatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctcta 112  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| ||||||||    
T  34618849 atatattaagaaaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatttctataatttcaatattattttgttattttatgatctcta 34618750  T
Q  113 acaattggtaaataatttatatattaaatat 143  Q
    |||||||||||||||| | ||||||||||||    
T  34618749 acaattggtaaataatgtctatattaaatat 34618719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 151
Target Start/End: Complemental strand, 3956773 - 3956690
Alignment:
Q  68 atatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataatttatatattaaatattattttca 151  Q
    ||||||||||| ||||||||| |||||||||||||| || ||| ||||||||||||||||| | ||||| ||||||||||||||    
T  3956773 atatttgtatcatttcaatatgattttgttattttatgacctccaacaattggtaaataatgtctatatcaaatattattttca 3956690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 45610161 - 45610021
Alignment:
Q  11 aaatatattaaaacaagtagtgtgtaatcaaagtttgtaaaagtaaaaaattaatttatatt--tgtatcctttcaatattattttgttattttaagatc 108  Q
    ||||||||||| | | ||||| |||||| ||||| || ||||||||||||| ||||||||||  ||||    ||||||||||| ||| |||||||| |      
T  45610161 aaatatattaagataggtagtttgtaattaaagtatgcaaaagtaaaaaataaatttatatttgtgtaagaattcaatattatcttgatattttaaaa-- 45610064  T
Q  109 tctaacaattggtaaataatttatatattaaatattattttca 151  Q
    |||| ||||| ||||||||| | ||||||||||||||||||||    
T  45610063 tctagcaattagtaaataatatctatattaaatattattttca 45610021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 26224523 - 26224634
Alignment:
Q  33 tgtaatcaaagtttgtaaaagtaaaaaattaatttatatttgtatcctttcaatattattttgttattttaagatctctaacaattggtaaataa--ttt 130  Q
    ||||||||||||||  |||||||| ||||  |||||||||||||||  || |||| ||||||  |||| |||||  ||||||||||  |||||||  | |    
T  26224523 tgtaatcaaagtttacaaaagtaataaatagatttatatttgtatcaattgaatagtatttttctattgtaaga--tctaacaatttttaaataatgtct 26224620  T
Q  131 atatattaaatatt 144  Q
    ||||||||||||||    
T  26224621 atatattaaatatt 26224634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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