View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2622_low_99 (Length: 240)
Name: NF2622_low_99
Description: NF2622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2622_low_99 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 5810071 - 5809851
Alignment:
| Q |
21 |
gggggtatgtcttgtgagaaattgttaggaacccagaaatcatgttgaatagaattttattttattttt-gttgagaaaacacaaaaaatgatatgtttc |
119 |
Q |
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| T |
5810071 |
gggggtatgtcttgtgagaaattgttaggaacccagaaatcatgttgaatagaattttttttttttttttgttgagaaaacacaaaaaatgatatgtttc |
5809972 |
T |
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| Q |
120 |
catattccaattcattaataatttcatgttttcttggcattataatatttcatctcatcattttattttgtttctttctttggtgggtacaaatatgttg |
219 |
Q |
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| T |
5809971 |
cattttccaatgcattaataatttcatgttttcttggcattataatatttcatctcatcattttattttgtttctttctttggtgggtacaaatatgttg |
5809872 |
T |
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| Q |
220 |
ttttctagtgatagaattaac |
240 |
Q |
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| T |
5809871 |
ttttctagtgatggaattaac |
5809851 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 37755376 - 37755319
Alignment:
| Q |
113 |
atgtttccatattccaattcattaataatttcatgttttcttggcattataatatttc |
170 |
Q |
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| T |
37755376 |
atgtttccattttccaatgcagtcataatttcatttttccttggcattataatatttc |
37755319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 37761350 - 37761293
Alignment:
| Q |
113 |
atgtttccatattccaattcattaataatttcatgttttcttggcattataatatttc |
170 |
Q |
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| T |
37761350 |
atgtttccattttccaatgcagtcataatttcatttttccttggcattataatatttc |
37761293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 38605424 - 38605479
Alignment:
| Q |
113 |
atgtttccatattccaattcattaataatttcatgttttcttggcattataatatt |
168 |
Q |
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| T |
38605424 |
atgtttccattttccaatgcaaacataatttcatgtttccttggcattataatatt |
38605479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 37739410 - 37739369
Alignment:
| Q |
199 |
ttggtgggtacaaatatgttgttttctagtgatagaattaac |
240 |
Q |
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| T |
37739410 |
ttggtgggtgcaaatatgttgttttttagtgatggaattaac |
37739369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 37755312 - 37755271
Alignment:
| Q |
199 |
ttggtgggtacaaatatgttgttttctagtgatagaattaac |
240 |
Q |
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| T |
37755312 |
ttggtgggtgcaaatatgttgttttttagtgatggaattaac |
37755271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 37761286 - 37761245
Alignment:
| Q |
199 |
ttggtgggtacaaatatgttgttttctagtgatagaattaac |
240 |
Q |
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| T |
37761286 |
ttggtgggtgcaaatatgttgttttttagtgatggaattaac |
37761245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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