View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2623-Insertion-2 (Length: 879)
Name: NF2623-Insertion-2
Description: NF2623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2623-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 8 - 588
Target Start/End: Complemental strand, 2486234 - 2485654
Alignment:
| Q |
8 |
gttattactacaaatgaaccggaaactaaacaaattcgcatgcatgtatcatggaaaataggaaaataaaaggagaatgaatcgataatatacctgagat |
107 |
Q |
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| T |
2486234 |
gttattactacaaatgtaccggaaactaaacaaattcgcatgcatgtatgatggaaaataggaaaataaaaggagaatgaatcgataatatacctgagat |
2486135 |
T |
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| Q |
108 |
aataagggaaattatcaaaggtgacattgctttctctaccatcaacaatgagtcgtagcatttcgttttcaatcttgtcaggagtgagggcgttggagga |
207 |
Q |
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| T |
2486134 |
aataagggaaattatcaaaggtgacattgctttctctaccatcaacaacgagtcgtagcatttcgttttcaatcttgtcaggagtgagggcgttggagga |
2486035 |
T |
|
| Q |
208 |
ggaggagtaagtattaggtttaaacatggtttgtccagaagccaagccaaggccaactccaacaccaacgctaagcgcggctgatatcaacattcctttc |
307 |
Q |
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| T |
2486034 |
ggaggagtaagtattaggtttaaacatggtttgtccagaagccaagccaaggccaactccaacaccaacgctaagcgcggctgatatcaacattcctttc |
2485935 |
T |
|
| Q |
308 |
tgttccatttttaatttactttcaaaaaattaaacgtaaaaactgaatgaatatgtatccaatacgtgaatgttgaaaattttagagagatatggaagaa |
407 |
Q |
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| T |
2485934 |
tgttccatttttaatttactttcaaaaaattaaccgtaaaaactgaatgaatatgtatccaatacgtgaatgttgaaaattttagagagatatggaagaa |
2485835 |
T |
|
| Q |
408 |
ggatcaatcatgtcctttgttttcatggtagtaaggtaatgtgtgttttgatttctggaaatggtgatcttatgagagttcccgctatttctggtgcggt |
507 |
Q |
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| T |
2485834 |
ggatcaatcatgtcctttgttttcatggtattaaggtaatgtgtgttttgatttctggaaatggtgatcttatgagagttcccgctatttctggtgcggt |
2485735 |
T |
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| Q |
508 |
ctttattttcttctcttattcaagtttaaaggatggagactagtgctgactcatgcatgcattcttacgtgtctctctctt |
588 |
Q |
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| T |
2485734 |
ctttattttcttctcttattcaagtttaaatgatggagactagtgctgactcatgcatgcattcttacgtgtctctctctt |
2485654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 812 - 849
Target Start/End: Complemental strand, 2485362 - 2485325
Alignment:
| Q |
812 |
taatttatccattttacgtatatgtgtatctaaaatac |
849 |
Q |
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| T |
2485362 |
taatttatccattttacgtatatgtgtatataaaatac |
2485325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 41595036 - 41595088
Alignment:
| Q |
104 |
agataataagggaaattatcaaaggtgacattgctttctctaccatcaacaat |
156 |
Q |
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| T |
41595036 |
agataataagggaatttatcaaaagtaacgttgctttctctgccatcaacaat |
41595088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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