View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2623-Insertion-3 (Length: 837)

Name: NF2623-Insertion-3
Description: NF2623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2623-Insertion-3
NF2623-Insertion-3
[»] chr5 (4 HSPs)
chr5 (7-353)||(22295764-22296108)
chr5 (424-672)||(22295443-22295693)
chr5 (724-807)||(22295339-22295421)
chr5 (62-203)||(26880381-26880526)
[»] chr4 (1 HSPs)
chr4 (53-282)||(39300443-39300672)
[»] chr1 (2 HSPs)
chr1 (77-317)||(41939895-41940135)
chr1 (58-282)||(21035606-21035830)
[»] chr2 (2 HSPs)
chr2 (55-282)||(41939436-41939663)
chr2 (58-285)||(36259813-36260040)
[»] chr7 (1 HSPs)
chr7 (64-282)||(36569956-36570174)
[»] chr8 (2 HSPs)
chr8 (58-278)||(13516696-13516916)
chr8 (58-278)||(13606229-13606449)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 7 - 353
Target Start/End: Complemental strand, 22296108 - 22295764
Alignment:
Q  7 accagcttcatcaatgttaagacttccttgctattgttggtggcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttca 106  Q
    |||||||||||||||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22296108 accagcttcatcaatgttaagacttccttgctattgctgt--gcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttca 22296011  T
Q  107 gaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacaca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22296010 gaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacaca 22295911  T
Q  207 tgagaaaaactgtggaaagctttggttttgtatctgtggatctgatttcaaacacaagagatctcttaaagatcatgttcgtgctttcggtgatggtcat 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22295910 tgagaaaaactgtggaaagctttggttttgtatctgtggatctgatttcaaacacaagagatctcttaaagatcatgttcgtgctttcggtgatggtcat 22295811  T
Q  307 gctccacacaccgtcgagagttgtgaagatcaagaagtgttgttagg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22295810 gctccacacaccgtcgagagttgtgaagatcaagaagtgttgttagg 22295764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 424 - 672
Target Start/End: Complemental strand, 22295693 - 22295443
Alignment:
Q  424 cgaatggtttttggtttttaatctataataactaataccatggttttaattccgaaaaacacgttatatcatgctatcaggcatcagctatgactcttat 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22295693 cgaatggtttttggtttttaatctataataactaataccatggttttaattccgaaaaacacgttatatcatgctatcaggcatcagctatgactcttat 22295594  T
Q  524 gtaagattataacggatttgaaatcttgactaatatgatttctaatgctctacatttcacacgttt--actatcaacccatcgatgatcgttggatttta 621  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||  || || ||| ||||||| || |||||||||||    
T  22295593 gtaagattataacggatttgaaatcttgactaatacgatttctaattctctacatttcacatgtttacacaattaacacatcgatcattgttggatttta 22295494  T
Q  622 aagttagtatttatacatttttaatactttagtctagtttaaaatttgaac 672  Q
    || ||||||||| || ||||| || |||||||||   ||||||||||||||    
T  22295493 aatttagtatttgtatattttaaaaactttagtcccctttaaaatttgaac 22295443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 724 - 807
Target Start/End: Complemental strand, 22295421 - 22295339
Alignment:
Q  724 aatatattgactgcatgaatattatcttgcatgaatatgtacaattgatgactatgagaatccaactttaactaatagagattt 807  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22295421 aatatattgactgctagaatattatgttgcatgaatatgtacaattgatgactatgagaatccaactttaact-atagagattt 22295339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 26880381 - 26880526
Alignment:
Q  62 agaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacact----tcaaacacactacaagaggaagcatggagcaaagccatttgggt 157  Q
    |||||||||| |||||||||||  | | |||| | |||||||||||||||||     || |||||||||||||||||||||||  | ||| | |||   |    
T  26880381 agaacaacattgagcatccaagagctaagccattgaaggatttcagaacactgcagacacacacactacaagaggaagcatggttcgaagacgtttactt 26880480  T
Q  158 gtagaaagtgtgggaaaccatttgcagttagaggtgactggagaac 203  Q
    || |||| |||||||| ||||| ||||| | |||||| ||||||||    
T  26880481 gtcgaaaatgtgggaagccattggcagtgaaaggtgattggagaac 26880526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 8e-48; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 53 - 282
Target Start/End: Original strand, 39300443 - 39300672
Alignment:
Q  53 agggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatt 152  Q
    ||||||| ||||||||||| |||||||||||  | | |||| | ||||||||||||||||| || |||||||||||||||||||||||  ||||  ||||    
T  39300443 agggatgtaagaacaacattgagcatccaagagctaagccattgaaggatttcagaacactgcagacacactacaagaggaagcatggttcaaaaacatt 39300542  T
Q  153 tgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtggatctgat 252  Q
        ||| |||| |||||||| ||||| ||||| | |||||| |||||||| ||||||||||||||||| |||| |||| |||||||||||||||| |||    
T  39300543 cacttgtcgaaaatgtgggaagccattggcagtgaaaggtgattggagaactcatgagaaaaactgtggcaagcgttggctttgtatctgtggatcagat 39300642  T
Q  253 ttcaaacacaagagatctcttaaagatcat 282  Q
    |||||||||||||| || ||||| ||||||    
T  39300643 ttcaaacacaagaggtcacttaaggatcat 39300672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 77 - 317
Target Start/End: Original strand, 41939895 - 41940135
Alignment:
Q  77 atccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggtgtagaaagtgtgggaaacc 176  Q
    |||||||| |||| ||||| || ||||||||||| |||||||||||||||||||| ||||| ||||  ||  |||| | ||| ||||||||| ||||  |    
T  41939895 atccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaagagaaagcacggagggaaatcattcgagtgcagaaagtgtaggaagac 41939994  T
Q  177 atttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtggatctgatttcaaacacaagagatctcttaaa 276  Q
    |||||| || ||||| || ||||| || |||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || |||    
T  41939995 atttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgtatctgtggttctgatttcaaacacaaaagatcgctaaaa 41940094  T
Q  277 gatcatgttcgtgctttcggtgatggtcatgctccacacac 317  Q
    || ||||||||||| || ||| |||| |||||||| |||||    
T  41940095 gaccatgttcgtgcgtttggtaatggccatgctcctcacac 41940135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 21035830 - 21035606
Alignment:
Q  58 tgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggt 157  Q
    |||| ||||||||| || || |||||  ||| |||| | || ||||||||||||||||||||||| || || ||||| |||||    ||||| |||  ||    
T  21035830 tgcaggaacaacattgatcacccaagagcaaagccattgaaagatttcagaacacttcaaacacattataaaaggaaacatgggattaagccttttatgt 21035731  T
Q  158 gtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtggatctgatttcaa 257  Q
    ||||||| ||||| ||  | ||||| |||||||| || |||||||| |||||||| || |||||||||||||||| |||| | ||||| || ||||| ||    
T  21035730 gtagaaaatgtggtaaggcttttgctgttagaggagattggagaactcatgagaagaattgtggaaagctttggtattgtctttgtggttcggattttaa 21035631  T
Q  258 acacaagagatctcttaaagatcat 282  Q
     || ||| |||| ||||||||||||    
T  21035630 gcataagcgatcgcttaaagatcat 21035606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 55 - 282
Target Start/End: Original strand, 41939436 - 41939663
Alignment:
Q  55 ggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatttg 154  Q
    ||||||||||||||||| || ||||||||  |||  ||||| || ||||| ||||||||||||||||| |||||||| |||||||||  ||||||||||     
T  41939436 ggatgcaagaacaacattgatcatccaagagcaaaaccactgaaagattttagaacacttcaaacacattacaagagaaagcatggaataaagccattta 41939535  T
Q  155 ggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtggatctgattt 254  Q
     ||||||||||||| | ||| |||||||||| ||||||||||||||||| || |||||||||||||| || ||||||| ||||   ||||| || |||||    
T  41939536 tgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaactgtgggaaactttggtattgttgttgtgggtccgattt 41939635  T
Q  255 caaacacaagagatctcttaaagatcat 282  Q
     || ||||| ||||| ||||||||||||    
T  41939636 taagcacaaaagatcacttaaagatcat 41939663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 58 - 285
Target Start/End: Complemental strand, 36260040 - 36259813
Alignment:
Q  58 tgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggt 157  Q
    ||||||||||||||  | ||||||||  |||  ||| | |||||||||||||| || ||||| || ||||| || ||||||||| |||||||||||   |    
T  36260040 tgcaagaacaacatcaatcatccaagagcaaaaccattgaaggatttcagaactctccaaactcattacaaaagaaagcatggaacaaagccatttatct 36259941  T
Q  158 gtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtggatctgatttcaa 257  Q
    | ||||| |||   ||| ||||||| |||| |||||| |||||||| ||||| ||||||||||||||| |||||| ||| |  ||||| || ||||| ||    
T  36259940 gcagaaaatgttctaaagcatttgctgttaaaggtgattggagaactcatgaaaaaaactgtggaaagttttggtattgcacttgtggttcggattttaa 36259841  T
Q  258 acacaagagatctcttaaagatcatgtt 285  Q
    |||||| |||||||||||||||||||||    
T  36259840 acacaaaagatctcttaaagatcatgtt 36259813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 64 - 282
Target Start/End: Original strand, 36569956 - 36570174
Alignment:
Q  64 aacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggtgtagaa 163  Q
    |||||||| || ||||||||  ||| ||| ||||| ||||| ||||||||||||||||| |||||||| || ||||||   ||||||||   ||||||||    
T  36569956 aacaacattgatcatccaagagcaaagcctctcaaagattttagaacacttcaaacacattacaagagaaaacatggaattaagccattcatgtgtagaa 36570055  T
Q  164 agtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtggatctgatttcaaacacaa 263  Q
    | ||  | ||  | ||||| |||||||| || |||||||| ||||| || || |||||||||||||||| |||||||||||| |||||||| ||||||||    
T  36570056 aatgcagcaaggcttttgctgttagaggagattggagaactcatgaaaagaattgtggaaagctttggtattgtatctgtggttctgattttaaacacaa 36570155  T
Q  264 gagatctcttaaagatcat 282  Q
    ||| |||||||||||||||    
T  36570156 gaggtctcttaaagatcat 36570174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 58 - 278
Target Start/End: Complemental strand, 13516916 - 13516696
Alignment:
Q  58 tgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggt 157  Q
    |||||| ||||||| || ||||| ||  ||| ||| ||||| ||||| ||||| ||||||||||| || ||||| ||||||||   ||| || | |  ||    
T  13516916 tgcaagcacaacattgaccatcctagagcaaagcctctcaaagattttagaactcttcaaacacattataagagaaagcatggtataaaaccttatatgt 13516817  T
Q  158 gtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtggatctgatttcaa 257  Q
    ||||||| ||||| ||| |||||||||| | |||||| ||||||||||||||||| || ||||||||  | |||| |||| | ||||| || ||||| ||    
T  13516816 gtagaaaatgtggcaaatcatttgcagtgaaaggtgattggagaacacatgagaagaattgtggaaaaatatggtattgtttgtgtggctcagattttaa 13516717  T
Q  258 acacaagagatctcttaaaga 278  Q
    ||| || || |||||||||||    
T  13516716 acataaaaggtctcttaaaga 13516696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 58 - 278
Target Start/End: Complemental strand, 13606449 - 13606229
Alignment:
Q  58 tgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggt 157  Q
    |||||| ||||||| || ||||| ||  ||| ||| ||||| ||||| ||||| ||||||||||| || ||||| ||||||||   ||| || | |  ||    
T  13606449 tgcaagcacaacattgaccatcctagagcaaagcctctcaaagattttagaactcttcaaacacattataagagaaagcatggtataaaaccttatatgt 13606350  T
Q  158 gtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtggatctgatttcaa 257  Q
    ||||||| ||||| ||| |||||||||| | |||||| ||||||||||||||||| || ||||||||  | |||| |||| | ||||| || ||||| ||    
T  13606349 gtagaaaatgtggcaaatcatttgcagtgaaaggtgattggagaacacatgagaagaattgtggaaaaatatggtattgtttgtgtggctcagattttaa 13606250  T
Q  258 acacaagagatctcttaaaga 278  Q
    ||| || || |||||||||||    
T  13606249 acataaaaggtctcttaaaga 13606229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University