View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2623-Insertion-5 (Length: 570)
Name: NF2623-Insertion-5
Description: NF2623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2623-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 6 - 570
Target Start/End: Complemental strand, 39109019 - 39108456
Alignment:
| Q |
6 |
cagaggaatccgatgaagaaagtaacttcacaccttctcttgaaagctgttgagaagaaccatcagaagaagaagaaacagagccagaatcatcattagc |
105 |
Q |
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| T |
39109019 |
cagaggaatccgatgaagaaagtaacttcacaccttctcttgaaagctgttgagaagaaccatcagaagaagaagaaacagagccagaatcatcattagc |
39108920 |
T |
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| Q |
106 |
cattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagcaaagatcttgctttcatctctagggcttgatct |
205 |
Q |
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| T |
39108919 |
cattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagcaaagatcttgctttcatctctagggcttgatct |
39108820 |
T |
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| Q |
206 |
gaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgttcttgtgttgcaatgagtgttcttgcatctttgatat |
305 |
Q |
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| T |
39108819 |
gaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgttcttgtgttgcaatgagtgttcttgcatctttgatat |
39108720 |
T |
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| Q |
306 |
atttctcaacaatctatnnnnnnnnnnnnnnnnnntattcagacatgttttgagaatgaaaaaacaaaacaagaatttaaggtgaaatatttagaggttt |
405 |
Q |
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| T |
39108719 |
atttctcaacaatctat-aaaacaaaaacaaaaaatattcagacatgttttgagaatgaaaaaacaaaacaagaatttaaggtgaaatatttagaggttt |
39108621 |
T |
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| Q |
406 |
actttacggtttgtgagccaccagtgttgttttttctctgttgaattgagaaaggaagttgtgacagccannnnnnnnnnnnggttgaaaatggtgatgt |
505 |
Q |
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| T |
39108620 |
accttacggtttgtgagccaccagtgttgttttttctctgttgaattcagaaaggaagttgtgacagccatttttgttttttggttgaaaatggtgatgt |
39108521 |
T |
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| Q |
506 |
gagtgaagaagattcaaggttgaatcatgaaaatatcaaaacagaacactatttgaggttttggt |
570 |
Q |
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| T |
39108520 |
gattgaagaagattcaaggttgaatcatgaaaatatcaaaacagaacactatttgaggttttggt |
39108456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 70 - 320
Target Start/End: Original strand, 44707989 - 44708239
Alignment:
| Q |
70 |
agaagaagaagaaacagagccagaatcatcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatag |
169 |
Q |
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| T |
44707989 |
agaagaagaagaaccagaggaaggatcttcattagtcattctcaaactcggaatgtagtcttgaagcatatcagcaacatctttgaatcttcttaggtaa |
44708088 |
T |
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| Q |
170 |
agcaaagatcttgctttcatctctagggcttgatctgaacttggagaaatagctaaagctgagtctagaagacttatagctgaaacaatctcgtttcgtt |
269 |
Q |
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| T |
44708089 |
agcaatgacctagctcttagctcaagagcttgatccaaacgcggtgatatagctaaagctgcgtcgagaagattcaaagctgaaaggatctcgctctgtt |
44708188 |
T |
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| Q |
270 |
cttgtgttgcaatgagtgttcttgcatctttgatatatttctcaacaatct |
320 |
Q |
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| T |
44708189 |
cttgtgttgctattaagcttcgtgcgtcttttatgtatttctccacaatct |
44708239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 47057730 - 47057663
Alignment:
| Q |
97 |
atcattagccattttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctca |
164 |
Q |
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| T |
47057730 |
atcatttgccattttcaaattaggaatatagtcttgaagcatatctgcaacatccttgaaccttctca |
47057663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 13720336 - 13720402
Alignment:
| Q |
109 |
tttcaaacttggaatataatcttgaagcatatttgctacgtctttgaatcttctcaaatagagcaaa |
175 |
Q |
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| T |
13720336 |
tttcatacatggtatatcatcctgaagcatatttgttacatcttcgaaccttctcaaatagagcaaa |
13720402 |
T |
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