View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2623-Insertion-7 (Length: 352)

Name: NF2623-Insertion-7
Description: NF2623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2623-Insertion-7
NF2623-Insertion-7
[»] chr3 (3 HSPs)
chr3 (233-339)||(25192170-25192276)
chr3 (13-101)||(25191946-25192038)
chr3 (134-166)||(25192076-25192108)


Alignment Details
Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 233 - 339
Target Start/End: Original strand, 25192170 - 25192276
Alignment:
Q  233 ataaccttattcttggtttttgattgcattttagagcagtgagattagggagaaattgtgcttgcatggaaaatatcgtctcactttaattgatctatac 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25192170 ataaccttattcttggtttttgattgcattttagagcagtgagattagggagaaattgagcttgcatggaaaatatcgtctcactttaattgatctatac 25192269  T
Q  333 atccaga 339  Q
    || ||||    
T  25192270 atgcaga 25192276  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 25191946 - 25192038
Alignment:
Q  13 tacacgacactctccaacgttagtgtagaaccgttcac----tctctcaatcactggccatttcatttctgcagataagaccagcttctcagg 101  Q
    ||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25191946 tacacgacactctccaacgttagtgtagaaccgttcactcactctctcaatcactggccatttcatttctgcagataagaccagcttctcagg 25192038  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 25192076 - 25192108
Alignment:
Q  134 atcacttcatattcatctaacatatgatcatgc 166  Q
    |||||||||||||||||||||||||||||||||    
T  25192076 atcacttcatattcatctaacatatgatcatgc 25192108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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