View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2623_high_5 (Length: 347)
Name: NF2623_high_5
Description: NF2623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2623_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 25382282 - 25381949
Alignment:
| Q |
1 |
aggaattggcccattgtgatttttgagggatattataataggggcataataaaatatttaacaaaagttcaaaataaatttcagaattaaaatatacttt |
100 |
Q |
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| T |
25382282 |
aggaattggcccattatgatttttgagggatattataataagggcataataaaatatttaacaaaagttcaaaataaatttcagaattaaaatatacttt |
25382183 |
T |
|
| Q |
101 |
taatgaaataacatagggattaatactaccccactgattcctcctagctctctaaattaattaaaagaggaagaccagcagttacattatatgcttgatt |
200 |
Q |
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| T |
25382182 |
taatgaaataacatagggattaatactaccccactgattcctcctagctctctaaattaattaaaagaggaagaccagcagttacattatatgcttgatt |
25382083 |
T |
|
| Q |
201 |
cctattcgttagatatattgcctaatcaattgctactaatacatatgtctaattacaaggttttgtaataagattgtcatgtccattttttctctcctct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25382082 |
cctattcgttagatatattgcctaatcaattgctactaatacatatgtctaattacaaggtcttgtaataagattgtcatgtccattttttctctcctct |
25381983 |
T |
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| Q |
301 |
cacaaagttcttcccctttttgtgatatcattct |
334 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
25381982 |
cacaaagttcttcccctttttgtgatttcattct |
25381949 |
T |
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