View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2623_high_6 (Length: 327)
Name: NF2623_high_6
Description: NF2623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2623_high_6 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 16791619 - 16791308
Alignment:
| Q |
19 |
atacgtggttccgattgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttc |
118 |
Q |
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| T |
16791619 |
atacatggttctgattgatagtcactgcattgtacatgattttaatacgtgacccttcactttgttcgatggctactcctaatgcactttcaatattttc |
16791520 |
T |
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| Q |
119 |
cttttcagcgataaccatctca-----gagaatcgattgtttatgttttttatttccactaaaagattcttgcaagaagtgagagaaaataatgacatac |
213 |
Q |
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| T |
16791519 |
cttttcagcgataaccatctcatagtcgagaatcgattgtttatgttttttatttccactaaaagattcttgcaagaagtgagagaaaataatgacatac |
16791420 |
T |
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| Q |
214 |
tcatagatttcaatggtagaagnnnnnnnnnnccaaagattaccacaacttgagggcattttcctatcataatgaatgagttcaaatgattctgtagcgt |
313 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
16791419 |
tcatagatttcaatggtggaa--aaaaaaaaaccaaagattaccacaacttgagggcattttcctatcataatgaatgtgttcaagtgattctgtagcgt |
16791322 |
T |
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| Q |
314 |
caatgaacttattt |
327 |
Q |
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|||||||||||||| |
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| T |
16791321 |
caatgaacttattt |
16791308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 16790207 - 16790002
Alignment:
| Q |
25 |
ggttccgattgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttc |
124 |
Q |
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| T |
16790207 |
ggttctgatcgatagtcactgcattgtacatgattttaacaattgatccttcactatgttcggtcgctactcctagcgcactttcaacattttccttttc |
16790108 |
T |
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| Q |
125 |
agcgataaccatctcagag------aatcgattgtttatg-ttttttatttccactaaaagattcttgcaagaagtgagagaaaataatgacatactcat |
217 |
Q |
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||| |||||||||||| || ||||||| ||||||| |||||||||||||||| | |||||||||||||||| |||||||||||||||||||| | |
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| T |
16790107 |
agcaataaccatctcatagtcaaacaatcgatcgtttatgtttttttatttccactatatgattcttgcaagaagt--gagaaaataatgacatactcgt |
16790010 |
T |
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| Q |
218 |
agatttca |
225 |
Q |
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|||||||| |
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| T |
16790009 |
agatttca |
16790002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 16616874 - 16616983
Alignment:
| Q |
31 |
gattgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgat |
130 |
Q |
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||||||||| ||||||||||||||| ||||| | |||| |||||||||||||||||| |||||||| | | ||||||||| | ||||||||| |||||| |
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| T |
16616874 |
gattgatagacactgcattgtacataattttcacaagtaatccttcactttgttcggcagctactccaactacactttcaacaatttcctttttagcgat |
16616973 |
T |
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| Q |
131 |
aaccatctca |
140 |
Q |
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||||| |||| |
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| T |
16616974 |
aaccacctca |
16616983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 16790601 - 16790709
Alignment:
| Q |
31 |
gattgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgat |
130 |
Q |
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|||||||||||| |||||||||||||||||||| |||| ||| |||| |||||||| |||||||||| |||||||| ||||||||| ||||| |||| |
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| T |
16790601 |
gattgatagtcattgcattgtacatgattttaacaagtaatcattcaatttgttcgaaagctactcctagcgcactttc-atattttccctttcaacgat |
16790699 |
T |
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| Q |
131 |
aaccatctca |
140 |
Q |
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||||| |||| |
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| T |
16790700 |
aaccacctca |
16790709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 16792513 - 16792621
Alignment:
| Q |
31 |
gattgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgat |
130 |
Q |
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|||||||||||| |||| ||||||||||||||| |||| ||| |||| |||||||| |||||||||| |||||||| ||||||||||||||| |||| |
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| T |
16792513 |
gattgatagtcattgcaatgtacatgattttaacaagtaatcattcaatttgttcgaaagctactcctagcgcactttc-atattttccttttcaacgat |
16792611 |
T |
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| Q |
131 |
aaccatctca |
140 |
Q |
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||||| |||| |
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| T |
16792612 |
aaccacctca |
16792621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 16628574 - 16628732
Alignment:
| Q |
31 |
gattgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgat |
130 |
Q |
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||||||| ||||||||||||||||||||||||| |||| ||||| || |||||||| |||| ||||| | ||||||| ||||||||||||| |||| |
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| T |
16628574 |
gattgatggtcactgcattgtacatgattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgat |
16628673 |
T |
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| Q |
131 |
aaccatctcagag------aatcgattgtttatgttttttatttccactaaaagattct |
183 |
Q |
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| T |
16628674 |
aaccacctcacagtcaaacaatcgattatttatgtcttttatttctgctaaaacattct |
16628732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 16637455 - 16637613
Alignment:
| Q |
31 |
gattgatagtcactgcattgtacatgattttaataagtgatccttcactttgttcggtggctactcctaatgcactttcaatattttccttttcagcgat |
130 |
Q |
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||||||| ||||||||||||||||||||||||| |||| ||||| || |||||||| |||| ||||| | ||||||| ||||||||||||| |||| |
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| T |
16637455 |
gattgatggtcactgcattgtacatgattttaacaagtaatcctccaacttgttcggaagctaatcctactaacctttcaacattttccttttcaccgat |
16637554 |
T |
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| Q |
131 |
aaccatctcagag------aatcgattgtttatgttttttatttccactaaaagattct |
183 |
Q |
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||||| |||| || |||||||| ||||||| ||||||||| |||||| ||||| |
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| T |
16637555 |
aaccacctcacagtcaaacaatcgattatttatgtcttttatttctgctaaaacattct |
16637613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 38877404 - 38877446
Alignment:
| Q |
31 |
gattgatagtcactgcattgtacatgattttaataagtgatcc |
73 |
Q |
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|||| |||||||||||||||||||||||||||| |||| |||| |
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| T |
38877404 |
gattcatagtcactgcattgtacatgattttaagaagtaatcc |
38877446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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