View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2623_low_10 (Length: 239)
Name: NF2623_low_10
Description: NF2623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2623_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 4798679 - 4798901
Alignment:
| Q |
17 |
cctttgatcaatctatagataataataaaacaagcttagtattttcgacacctcttacaaattctgaaattgacaacgcctgtcacaaaatcgtgttaca |
116 |
Q |
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| T |
4798679 |
cctttgatgaatctatagataataataaaacaagcttagtattttcaacacctgtcacaaattctgaaattgataacgtttgtcactaaatcgtgccacg |
4798778 |
T |
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| Q |
117 |
atttaccttcaacataatccatgctctttgctttgaaaatcgtgacatgcctccataattgtgtcacgattatgaattttcacaagttcacaattttgaa |
216 |
Q |
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| T |
4798779 |
atttaccttcaacagaaactatgctccttgctttaaaaatcgtgacacgcctccataattgtgtcacgattatgaattttcacaagttcacaattttgaa |
4798878 |
T |
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| Q |
217 |
gtcaatatgcaacagagaactaa |
239 |
Q |
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| T |
4798879 |
gttaatatgcaaatgagaactaa |
4798901 |
T |
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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 28308069 - 28308146
Alignment:
| Q |
154 |
aatcgtgacatgcctccataattgtgtcacgattatgaattttcacaagttcacaattttgaagtcaatatgcaacaga |
232 |
Q |
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| T |
28308069 |
aatcgtgacacgcctccataattgtgtcacggttatggattttctc-atatcacaattttgaagtcaatatgcaacaga |
28308146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 197
Target Start/End: Complemental strand, 5990154 - 5990108
Alignment:
| Q |
151 |
gaaaatcgtgacatgcctccataattgtgtcacgattatgaattttc |
197 |
Q |
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| T |
5990154 |
gaaaatcgcgacacgcctccataatcgtgtcacgattatgaactttc |
5990108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 32868890 - 32868857
Alignment:
| Q |
26 |
aatctatagataataataaaacaagcttagtatt |
59 |
Q |
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| T |
32868890 |
aatctatagataataataaagcaagcttagtatt |
32868857 |
T |
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