View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2623_low_2 (Length: 527)

Name: NF2623_low_2
Description: NF2623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2623_low_2
NF2623_low_2
[»] chr2 (2 HSPs)
chr2 (1-510)||(18642280-18642787)
chr2 (249-465)||(39752619-39752834)
[»] chr3 (4 HSPs)
chr3 (100-323)||(25952304-25952519)
chr3 (89-323)||(25951782-25952017)
chr3 (126-323)||(25953388-25953581)
chr3 (180-323)||(25952842-25952984)
[»] chr8 (2 HSPs)
chr8 (105-145)||(10874914-10874954)
chr8 (417-457)||(18668688-18668728)
[»] chr5 (1 HSPs)
chr5 (104-148)||(10468965-10469009)
[»] chr7 (1 HSPs)
chr7 (406-439)||(42759878-42759911)
[»] chr1 (2 HSPs)
chr1 (368-461)||(2757447-2757539)
chr1 (104-148)||(35368288-35368332)
[»] scaffold0154 (1 HSPs)
scaffold0154 (301-465)||(28456-28620)


Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 18642280 - 18642787
Alignment:
Q  1 ggctaagattccgtttttagttttcaactaccaaaaagataaaagcgtcactttatcaaaaaagttggttcatagacgaatcctttggctgaaaaatgtg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18642280 ggctaagatttcgtttttagttttcaactaccaaaaagataaaagcgtcactttatcaaaaaagttggttcatagacgaatcctttggctgaaaaatgtg 18642379  T
Q  101 acaattcctttcatttcaaataacccaaacacaagatagccaaatcaatggaagagaagatgaacattttctagactcacctcctaaactttcgtattga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  18642380 acaattcctttcatttcaaataacccaaacacaagatagccaaatcaatggaagagaagatcgacattttctagactcacctcctaaactttcgtattga 18642479  T
Q  201 gtgaggtgatcagaaagacacattagacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaaaact 300  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18642480 gtgacgtgatcagaaagacacatcagacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaaaact 18642579  T
Q  301 agtgattgacgctttcctccatctcatagccactcgaagacatattataattaaacggaaaaattccaagccgaagccaattatccttcactggtatgcg 400  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  18642580 agtgattgacgctttcctccatctcatagccactcgaagac--attataattaaacggaaaaattccaagccgaagccaattttccttcattggtatgcg 18642677  T
Q  401 attgtgtaataactgtcaaacaaacaaagaaaccttcaaagggatagctttattccagacaatatcttaggtgccataaagaccagcctgctccacatga 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18642678 attgtgtaataactgtcaaataaacaaagaaaccttcaaagggatagttttattccagacaatatcttaggtgccataaagaccagcctgctccacatga 18642777  T
Q  501 gagaccatat 510  Q
    ||||||||||    
T  18642778 gagaccatat 18642787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 465
Target Start/End: Original strand, 39752619 - 39752834
Alignment:
Q  249 cattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaaaactagtgattgacgctttcctccatctcatagccactcgaagacatatt-a 347  Q
    |||||||||||||||||| || ||||||||||||||||||||  ||||||  |   ||||||| ||||||||| | || | ||||||||| ||||||| |    
T  39752619 cattgcagaatgagaaaccaaatgttaccataaaaattacaaaaaaaaaaaaaa--attgacgttttcctccaccccacatccactcgaacacatattta 39752716  T
Q  348 taattaaacggaaaaattccaagccgaagccaattatccttcactggtatgcgattgtgtaataactgtcaaacaaacaaagaaaccttcaaagggatag 447  Q
     | ||| ||  || |||| ||  |  |||| |||| |||||   || |||||||||||| ||||||  |||| |||||||||||||||||||| ||  ||    
T  39752717 gagttagacataagaatttcacacttaagcaaattgtccttagttgttatgcgattgtgcaataaccatcaagcaaacaaagaaaccttcaaaagggcag 39752816  T
Q  448 ctttattccagacaatat 465  Q
    |||||||||||| |||||    
T  39752817 ctttattccagataatat 39752834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 323
Target Start/End: Complemental strand, 25952519 - 25952304
Alignment:
Q  100 gacaattcctttcatttcaaataacccaaacacaagatagccaaatcaatggaagagaagatgaacattttctagactcacctcctaaactttcgtattg 199  Q
    |||||||  |||| |||||||||||||||||||| ||||| ||||||||  ||||||||| |  ||||||        | |||||||| | |||  ||||    
T  25952519 gacaattattttcttttcaaataacccaaacacaggatagtcaaatcaaatgaagagaaggtcgacattt--------ctcctcctaagcgttcaaattg 25952428  T
Q  200 agtgaggtgatcagaaagacacattagacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaaaac 299  Q
    ||| ||||||| ||||| |  ||||  ||||||| |||||||   |||||| ||||||||||||||  ||  | |||||| ||||| | |||| |||||     
T  25952427 agtaaggtgataagaaataatcattgtacctgcttagtgaatacttaaccaatgcagaatgagaaatcaaacgctaccatcaaaatcaaaacccaaaaat 25952328  T
Q  300 tagtgattgacgctttcctccatc 323  Q
     |||||||||| ||||||||||||    
T  25952327 aagtgattgacactttcctccatc 25952304  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 323
Target Start/End: Complemental strand, 25952017 - 25951782
Alignment:
Q  89 ctgaaaaatgtgacaattcctttcatttcaaataacccaaacacaagatagccaaatc-aatggaagagaagatgaaca-ttttctagactcacctccta 186  Q
    |||||||||| |||||||  | || ||||||||||||||||||||||| | ||||||| ||||||| | ||| |   || |||| ||||||| |||||||    
T  25952017 ctgaaaaatgcgacaattattgtcttttcaaataacccaaacacaagacaaccaaatcaaatggaa-ataaggtcgccatttttatagactctcctccta 25951919  T
Q  187 aactttcgtattgagtgaggtgatcagaaagacacattagacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaatt 286  Q
    | |||||  ||||||| ||||||| |||||||  | | || |||||| ||||||    |||||| || ||| |||||||  || || |||||| |||||     
T  25951918 agctttcaaattgagtaaggtgataagaaagaatcgtcaggcctgcttagtgaagaattaaccaatgtagattgagaaatcaaatgctaccatcaaaatc 25951819  T
Q  287 acaaccaaaaaactagtgattgacgctttcctccatc 323  Q
    | |||| |||||  ||||||||| |||||||| ||||    
T  25951818 aaaacccaaaaataagtgattgatgctttccttcatc 25951782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 323
Target Start/End: Complemental strand, 25953581 - 25953388
Alignment:
Q  126 caaacacaagatagccaaatcaatggaagagaagatgaacattttctagactcacctcctaaactttcgtattgagtgaggtgatcagaaagacacatta 225  Q
    |||||||||||||| ||||||||    ||||||| | | |||||||||||||| |||||||| ||||   | ||||| ||||||| | | |||  || |     
T  25953581 caaacacaagatagtcaaatcaaatatagagaaggtcagcattttctagactctcctcctaagcttttaaactgagtaaggtgataacatagagtcaat- 25953483  T
Q  226 gacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaaaactagtgattgacgctttcctccatc 323  Q
       ||||| |||||||   |||||| |||||| |||||||  ||  | |||||| ||||| |||||| |||||| |||||||||| ||||||||||||    
T  25953482 ---ctgcttagtgaatacttaaccaatgcagagtgagaaatcaaacgctaccatcaaaatcacaacccaaaaacaagtgattgacactttcctccatc 25953388  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 323
Target Start/End: Complemental strand, 25952984 - 25952842
Alignment:
Q  180 cctcctaaactttcgtattgagtgaggtgatcagaaagacacattagacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccat 279  Q
    |||||||| |||||  ||||||| ||||  |||||||||  |||| ||| |||| ||||||| | |||||| |||| |||||||||  ||  | ||||||    
T  25952984 cctcctaagctttcaaattgagtaaggtactcagaaagagtcattggacatgcttagtgaatatttaaccaatgcaaaatgagaaatcaaacgctaccat 25952885  T
Q  280 aaaaattacaaccaaaaaactagtgattgacgctttcctccatc 323  Q
     ||||| |||||| || || |||||||||||  |||||||||||    
T  25952884 caaaatcacaacccaagaa-tagtgattgacattttcctccatc 25952842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 10874914 - 10874954
Alignment:
Q  105 ttcctttcatttcaaataacccaaacacaagatagccaaat 145  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  10874914 ttcctttcctttcaaataacccaaacagaagatagccaaat 10874954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 457
Target Start/End: Original strand, 18668688 - 18668728
Alignment:
Q  417 caaacaaacaaagaaaccttcaaagggatagctttattcca 457  Q
    |||||||||||||| ||||||||||||||| ||| ||||||    
T  18668688 caaacaaacaaagacaccttcaaagggatatcttgattcca 18668728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 10468965 - 10469009
Alignment:
Q  104 attcctttcatttcaaataacccaaacacaagatagccaaatcaa 148  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||    
T  10468965 attcctttcatttcaaataacccaaatgcaacatagccaaatcaa 10469009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 439
Target Start/End: Complemental strand, 42759911 - 42759878
Alignment:
Q  406 gtaataactgtcaaacaaacaaagaaaccttcaa 439  Q
    |||| |||||||||||||||||||||||||||||    
T  42759911 gtaacaactgtcaaacaaacaaagaaaccttcaa 42759878  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 461
Target Start/End: Complemental strand, 2757539 - 2757447
Alignment:
Q  368 aagccgaagccaattatccttcactggtatgcgattgtgtaataactgtcaaacaaacaaagaaaccttcaaagggatagctttattccagaca 461  Q
    |||||||| | |||||||||||| |||||  |||||| |||| ||| | |||| ||| ||||||||| ||||||||||| |||| ||| |||||    
T  2757539 aagccgaatcaaattatccttcattggtaaccgattgcgtaagaaccgccaaataaataaagaaacc-tcaaagggataacttttttcaagaca 2757447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 35368332 - 35368288
Alignment:
Q  104 attcctttcatttcaaataacccaaacacaagatagccaaatcaa 148  Q
    |||||||||||| |||||||||||||  ||| |||||||||||||    
T  35368332 attcctttcattccaaataacccaaatgcaacatagccaaatcaa 35368288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 465
Target Start/End: Original strand, 28456 - 28620
Alignment:
Q  301 agtgattgacgctttcctccatctcatagccactcgaagacatattataattaaacggaaaaattccaagccgaagccaattatccttcactggtatgcg 400  Q
    ||||||||||  ||||||||||| ||  | ||||| || |||||||| | ||| |||| | ||||||| |  |||   |||||||||||| | | |||||    
T  28456 agtgattgacaatttcctccatcccactgtcactcaaacacatattaaagttagacggtagaattccacgttgaattaaattatccttcattagcatgcg 28555  T
Q  401 attgtgtaataactgtcaaacaaacaaagaaaccttcaaagggatagctttattccagacaatat 465  Q
    |||||| |  |||| ||||||||| ||||||||||| || || | |  ||||||||| |||||||    
T  28556 attgtgaagcaactatcaaacaaataaagaaacctttaagggaacatatttattccaaacaatat 28620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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