View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2623_low_8 (Length: 289)

Name: NF2623_low_8
Description: NF2623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2623_low_8
NF2623_low_8
[»] chr7 (8 HSPs)
chr7 (8-222)||(7907458-7907673)
chr7 (12-171)||(45837816-45837978)
chr7 (8-173)||(32786794-32786962)
chr7 (29-100)||(5528294-5528365)
chr7 (43-170)||(39837393-39837522)
chr7 (24-166)||(2033631-2033775)
chr7 (15-171)||(28337215-28337374)
chr7 (148-180)||(38652621-38652653)
[»] chr4 (12 HSPs)
chr4 (8-171)||(50297628-50297794)
chr4 (8-169)||(54997695-54997860)
chr4 (29-174)||(32895468-32895615)
chr4 (32-171)||(31690582-31690722)
chr4 (8-89)||(36989837-36989919)
chr4 (24-171)||(28675676-28675825)
chr4 (8-120)||(27918380-27918493)
chr4 (8-170)||(14138979-14139144)
chr4 (8-179)||(22019393-22019567)
chr4 (59-171)||(29508720-29508834)
chr4 (80-171)||(14603008-14603101)
chr4 (136-171)||(41460529-41460565)
[»] scaffold0542 (1 HSPs)
scaffold0542 (8-171)||(4519-4684)
[»] chr1 (7 HSPs)
chr1 (8-120)||(4658677-4658789)
chr1 (8-170)||(5799731-5799896)
chr1 (8-145)||(31262562-31262702)
chr1 (8-174)||(41884607-41884776)
chr1 (8-89)||(1035572-1035654)
chr1 (77-169)||(8644680-8644773)
chr1 (39-100)||(48149250-48149311)
[»] chr2 (10 HSPs)
chr2 (8-162)||(20061055-20061212)
chr2 (84-165)||(1705047-1705130)
chr2 (8-171)||(14275760-14275925)
chr2 (8-162)||(39420193-39420350)
chr2 (70-145)||(42184863-42184939)
chr2 (8-89)||(2889110-2889192)
chr2 (104-171)||(13242226-13242295)
chr2 (59-168)||(36528403-36528514)
chr2 (136-173)||(44721342-44721380)
chr2 (43-146)||(36285005-36285109)
[»] chr8 (6 HSPs)
chr8 (8-145)||(31313311-31313450)
chr8 (8-171)||(40505246-40505411)
chr8 (136-174)||(38869903-38869942)
chr8 (8-171)||(6530310-6530476)
chr8 (8-88)||(5493362-5493443)
chr8 (104-171)||(15067673-15067742)
[»] chr6 (2 HSPs)
chr6 (29-112)||(10960554-10960637)
chr6 (136-171)||(154333-154369)
[»] chr3 (8 HSPs)
chr3 (29-144)||(37919184-37919299)
chr3 (41-178)||(54787783-54787922)
chr3 (29-141)||(48192590-48192702)
chr3 (22-89)||(4539875-4539942)
chr3 (29-170)||(13637916-13638059)
chr3 (8-174)||(33791483-33791652)
chr3 (136-171)||(24355448-24355484)
chr3 (146-174)||(28945977-28946005)
[»] chr5 (3 HSPs)
chr5 (11-89)||(41144656-41144735)
chr5 (125-172)||(29429729-29429777)
chr5 (136-175)||(42655892-42655932)
[»] scaffold0005 (1 HSPs)
scaffold0005 (80-171)||(214277-214370)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 7907458 - 7907673
Alignment:
Q  8 taacttgtgccctcaaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatttt 107  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||||    
T  7907458 taacttgtgccctcaaggcacatgttaagatactcattatagaaatagacatatcaaaaaccatgcattcaacttcttaaaaattgttatattgtatttt 7907557  T
Q  108 ccaatgcaaaattacttttttaggttggttaacatgtg-cttaagggcacaagttaacatgacccatattttttcagggaggaagaaacctacttcttac 206  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7907558 ccaatgcaaaattacttttttaggttgcttaacatgtgccttaagggcacaagttaacatgacccatattttttcagtgaggaagaaacctacttcttac 7907657  T
Q  207 ttatataacccgtgaa 222  Q
    |||  |||||||||||    
T  7907658 ttaattaacccgtgaa 7907673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 171
Target Start/End: Original strand, 45837816 - 45837978
Alignment:
Q  12 ttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttcca 110  Q
    |||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||  |||||||| |||||| |||||| |||||||||||| |||||||    
T  45837816 ttgtgcccacaagggcacatgttaagatactcattatagaaatacacatatcaaacggcgtgcattcaacttattaaaagttgtcatattgtgttttcca 45837915  T
Q  111 atgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 171  Q
    ||||||| || || ||||||| ||| |||||||||| | ||||||||||||||| ||||||||    
T  45837916 atgcaaagttgctctttttagattgcttaacatgtgccctaagggcacaagttagcatgaccc 45837978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 32786794 - 32786962
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||||||||||||| || ||||||||  |||||||||| ||||| || ||||||||  ||||||| ||||||||||||| ||   ||||| | |||    
T  32786794 taacttgtgccctcaagggcacatgttaaggaactcattatataaatatacgtatcaaaagtcgtgcattcaacttcttaaaagttaaaatattatgttt 32786893  T
Q  107 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgacccat 173  Q
    |||||| |||| || || ||||  ||||  |||||||||| | | ||||||||||||| ||||||||||    
T  32786894 tccaatacaaagttgctcttttcgggttccttaacatgtgcccttagggcacaagttagcatgacccat 32786962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 5528294 - 5528365
Alignment:
Q  29 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatatt 100  Q
    |||||||||| ||||||||||||||| |||||| ||||| ||| ||| |||||||||||||  |||||||||    
T  5528294 atgttaagattctcattataaaaatacacatattaaaaatcgtacattcaacttcttaaaagctgtcatatt 5528365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 39837522 - 39837393
Alignment:
Q  43 attataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaaca 141  Q
    |||||| ||||| || ||||||||  ||||||| ||||||||||||| ||| | |||| |||||| || |||||| || || ||||||| ||  ||||||    
T  39837522 attatagaaatacacgtatcaaaagtcgtgcattcaacttcttaaaagttgacctattatatttttcagtgcaaagttgctatttttagattatttaaca 39837423  T
Q  142 tgtg-cttaagggcacaagttaacatgacc 170  Q
    | || | |||||||||||||||||||||||    
T  39837422 tatgccctaagggcacaagttaacatgacc 39837393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 2033631 - 2033775
Alignment:
Q  24 ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact 123  Q
    |||| |||||||||  || |||||| ||||| |  ||| |||||  |||||| |||||| |||||| |||  || || |||||| ||||||||||||| |    
T  2033631 ggcacatgttaagaaccttattatagaaatacatttataaaaaattgtgcattcaactttttaaaagttgatatgttatatttttcaatgcaaaattatt 2033730  T
Q  124 tttttag-gttggttaacatgtg-cttaagggcacaagttaacat 166  Q
    ||||| | |||| |||||||||| ||||| |||| ||||||||||    
T  2033731 ttttttgagttgtttaacatgtgccttaaaggcataagttaacat 2033775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 171
Target Start/End: Original strand, 28337215 - 28337374
Alignment:
Q  15 tgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatg 113  Q
    ||||||||||| || ||||||||| |||||||||| ||||| |  ||| ||||| ||||||  ||||||||||||| ||   ||| | |||||| |||||    
T  28337215 tgccctcaagggcacatgttaagaaactcattatagaaatatatgtataaaaaatcgtgcaatcaacttcttaaaagttaaaatactatatttttcaatg 28337314  T
Q  114 caaaattact-tttttaggttggttaacatgt-gcttaagggcacaagttaacatgaccc 171  Q
    |||| || || ||||||| ||  |||||||||  ||| |||||| || ||||||||||||    
T  28337315 caaagttgctctttttagattccttaacatgtacctttagggcataatttaacatgaccc 28337374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 38652653 - 38652621
Alignment:
Q  148 taagggcacaagttaacatgacccatatttttt 180  Q
    ||||||||||||||||||||||||| |||||||    
T  38652653 taagggcacaagttaacatgacccaaatttttt 38652621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 50297794 - 50297628
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||||||||||| |||    
T  50297794 taacttgtgccctcaagggcacatgttaagatactcattatagaaatacacatatcaaaaggcgtgcattcaacttcttaaaagttgtcatattgtgttt 50297695  T
Q  107 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 171  Q
    ||||||||||||||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||    
T  50297694 tccaatgcaaaattactcttttttggttgcttaacatgtgccctaagggcacaagttaacatgaccc 50297628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 54997860 - 54997695
Alignment:
Q  8 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattg-tatt 105  Q
    ||||||||||| |||| |||| |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||| ||||||   ||    
T  54997860 taacttgtgccatcaatggcacatgttaagatactcattatagaaataaacatatcaaaatgcgtgcattcaacttcttaaaagttgtaatattgcgttt 54997761  T
Q  106 ttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgac 169  Q
    ||||||||||||||| || ||||||||||| |||||||||| | ||| | ||||||||||||||||    
T  54997760 ttccaatgcaaaattgctctttttaggttgcttaacatgtgccctaatgacacaagttaacatgac 54997695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 32895615 - 32895468
Alignment:
Q  29 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttt 127  Q
    ||||||| ||| |||||||||||||| |||||| ||||  |||| ||  ||||| |||||| |||||||||||||||||| |||||||||||| | ||||    
T  32895615 atgttaaaatattcattataaaaatacacatattaaaagacgtgtatttaactttttaaaagttgtcatattgtattttctaatgcaaaattattatttt 32895516  T
Q  128 taggttggttaacatgtgct-taagggcacaagttaacatgacccata 174  Q
    || |||| |||||||||||| ||||   |||||||||||| |||||||    
T  32895515 taagttgtttaacatgtgctctaagaatacaagttaacataacccata 32895468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 31690582 - 31690722
Alignment:
Q  32 ttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttag 130  Q
    |||||||||| |||||| ||||| |||||| |||| | |||||| || |||||||||| |||||||||||| ||||  |||||||||||  | |||||||    
T  31690582 ttaagatacttattatagaaatacacatattaaaatgtgtgcattcagcttcttaaaagttgtcatattgtgtttt-taatgcaaaattgttctttttag 31690680  T
Q  131 gttggttaacatg-tgcttaagggcacaagttaacatgaccc 171  Q
     ||| |||||||| | ||||||||||||||||| ||||||||    
T  31690681 attgcttaacatgttccttaagggcacaagttagcatgaccc 31690722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 36989837 - 36989919
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 89  Q
    ||||||||| |||||||| || || |||||| |||||||||||||||| |||||| ||||  ||||||| |||||||||||||    
T  36989837 taacttgtgtcctcaagggcacatattaagaaactcattataaaaatatacatattaaaagtcgtgcattcaacttcttaaaa 36989919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 171
Target Start/End: Complemental strand, 28675825 - 28675676
Alignment:
Q  24 ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact 123  Q
    |||| ||||||||  | |||||||| ||||| |||||||||||    ||||| |||||  |||||| | |  ||||| | ||||| ||||||||||| ||    
T  28675825 ggcacatgttaaggaagtcattatagaaatatacatatcaaaatttttgcattcaactgtttaaaagtcgatatattatgttttctaatgcaaaattgct 28675726  T
Q  124 ttt-ttaggttggttaacatgtgct-taagggcacaagttaacatgaccc 171  Q
     || |||||||| |||||||||||  ||||||||||||||||||||||||    
T  28675725 cttattaggttgcttaacatgtgccctaagggcacaagttaacatgaccc 28675676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 27918493 - 27918380
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||||||||||||| || ||||||||  |||| ||||| ||||| |  ||||||||  |||||||  |||||||||||| ||   ||||| |||||    
T  27918493 taacttgtgccctcaaggacacatgttaaggaactcgttatagaaatatatgtatcaaaagtcgtgcattaaacttcttaaaagttaaaatattatattt 27918394  T
Q  107 tccaatgcaaaatt 120  Q
    | ||||||||||||    
T  27918393 ttcaatgcaaaatt 27918380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 170
Target Start/End: Original strand, 14138979 - 14139144
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    ||||||||||| |||||| || |||||||   || | ||||| ||||| || ||||||||| |||| |  ||| ||||||||| ||   ||||| |||||    
T  14138979 taacttgtgccttcaagggcacatgttaatgaaccctttatagaaatatacgtatcaaaaatcgtgtagtcaatttcttaaaagttaaaatattatattt 14139078  T
Q  107 tccaatgcaaaattactttttta-ggttggttaacatgtg--cttaagggcacaagttaacatgacc 170  Q
    |||||| || ||||||||||||| ||||  ||||||||||  ||||| | |||||||||||||||||    
T  14139079 tccaatacataattacttttttagggttccttaacatgtgcccttaa-gacacaagttaacatgacc 14139144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 22019393 - 22019567
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||||||||||||| || |||||||   |||||||||| ||||| |   || ||||| ||| ||| |||||||| ||||||     |||  |||||    
T  22019393 taacttgtgccctcaaggacacatgttaaagaactcattatagaaatatatgcattaaaaatcgtacattcaacttctaaaaaatgaaactatcatattt 22019492  T
Q  107 tccaatgcaaaattacttttttagg-ttggttaacatgtgct-taagggcacaagttaacatgacccatattttt 179  Q
    ||||||| |||||| |  |||| || ||  |||||||||||  | ||||||||||||||||||||||||||||||    
T  22019493 tccaatgtaaaattgcccttttcgggtttcttaacatgtgcccttagggcacaagttaacatgacccatattttt 22019567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 29508720 - 29508834
Alignment:
Q  59 tatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcac 156  Q
    ||||||||  |||| || ||||||||||||| ||   ||||| | ||||||||||||||||| || ||||| ||||  |||||||||| | | |||||||    
T  29508720 tatcaaaagtcgtgtattcaacttcttaaaagtttaaatattatgttttccaatgcaaaattgctctttttgggttccttaacatgtgcccttagggcac 29508819  T
Q  157 aagttaacatgaccc 171  Q
    ||||||||| |||||    
T  29508820 aagttaacacgaccc 29508834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 14603101 - 14603008
Alignment:
Q  80 cttcttaaaaattgtcatattgtattttccaatgcaaaattac-ttttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 171  Q
    ||||||||||||||  ||||| |||||| |||| ||||||| | |||||||| ||| |||||||||| | |||| |||||| ||||||| ||||    
T  14603101 cttcttaaaaattgatatattatatttttcaatacaaaattgctttttttagattgtttaacatgtgccataagagcacaaattaacataaccc 14603008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 41460565 - 41460529
Alignment:
Q  136 ttaacatgtgct-taagggcacaagttaacatgaccc 171  Q
    |||||||||||| ||||||||||||||||||||||||    
T  41460565 ttaacatgtgctctaagggcacaagttaacatgaccc 41460529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 4519 - 4684
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||| | |||    
T  4519 taacttgtgccctcaaggacacatgttaagatactcattatagaaatatacatatcaaaatgcgtgcattcaacttcttaaaaattgtcatattat-ttt 4617  T
Q  107 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 171  Q
    | |||||  ||||| || ||||||||||| |||| ||||| ||| | | ||||||||||||||||||    
T  4618 ttcaatgtgaaattgctctttttaggttgcttaatatgtgcctttatgacacaagttaacatgaccc 4684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 4658677 - 4658789
Alignment:
Q  8 taacttgtgccctcaaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatttt 107  Q
    ||||||| ||| |||||||| ||||||||||||| |||||||||||| |||||| |||| | |||||| |||||||||||||||||||||||||| ||||    
T  4658677 taacttgagccttcaaggcacatgttaagatacttattataaaaatacacatattaaaaggtgtgcattcaacttcttaaaaattgtcatattgtgtttt 4658776  T
Q  108 ccaatgcaaaatt 120  Q
    || ||| ||||||    
T  4658777 ccgatgtaaaatt 4658789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 5799896 - 5799731
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||||||||||||| || ||||||||  | | |||||||||||| |||||||||||   |||||| ||||||||||||  ||| ||||||   |||    
T  5799896 taacttgtgccctcaaggacatatgttaaggaagttattataaaaatatacatatcaaaagttgtgcattcaacttcttaaaggttgacatattacgttt 5799797  T
Q  107 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgacc 170  Q
    | |||||||||| | || ||||||||||| |||||||||| | ||||||||||||||| |||||||    
T  5799796 ttcaatgcaaaactgctctttttaggttgtttaacatgtgccataagggcacaagttagcatgacc 5799731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 31262562 - 31262702
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaataga-catatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatt 105  Q
    |||||||| ||||||||| || || |||||| |||||||||| ||||| | |||||||||||  |||||| ||||||||||||| ||| |||||| | ||    
T  31262562 taacttgtaccctcaagggcatatattaagaaactcattatagaaatataacatatcaaaaattgtgcattcaacttcttaaaagttgacatattatgtt 31262661  T
Q  106 ttccaatgcaaaatt-acttttttaggttggttaacatgtg 145  Q
    |||||||||||||||   |||||||||||| ||||||||||    
T  31262662 ttccaatgcaaaattgttttttttaggttgtttaacatgtg 31262702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 41884776 - 41884607
Alignment:
Q  8 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||||||||||| |||| ||||||||  |||||||||| ||| | |||||||||||  | |||||   ||||||||||| ||   ||||| |||||    
T  41884776 taacttgtgccctcaatggcacatgttaagtaactcattatagaaacatacatatcaaaagtcatgcatttgacttcttaaaagttaaaatattttattt 41884677  T
Q  107 tccaatgcaaaattactttt-ttaggttggttaacatgtgc-ttaagggcacaagttaacatgacccata 174  Q
    ||||||||||| ||  |||| |||||||  ||||||||||| || | ||||||||||||||| |||||||    
T  41884676 tccaatgcaaagttgtttttgttaggttccttaacatgtgcctttaaggcacaagttaacattacccata 41884607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 1035572 - 1035654
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 89  Q
    |||||||||||||||||| || ||||||||  |||||||||| ||||| |||||||||||  | ||||| |||||| ||||||    
T  1035572 taacttgtgccctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcttgcattcaacttattaaaa 1035654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 169
Target Start/End: Complemental strand, 8644773 - 8644680
Alignment:
Q  77 caacttcttaaaaattgtcatattgtattttccaatgcaaaattacttttttaggttggttaacatgtgct-taagggcacaagttaacatgac 169  Q
    ||||||||||||||||   || || |||||||||||||||| || ||||||| | ||  |||||||  ||| | ||||||||||||||||||||    
T  8644773 caacttcttaaaaattaaaatgttatattttccaatgcaaagttgcttttttggatttcttaacatacgctcttagggcacaagttaacatgac 8644680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 48149311 - 48149250
Alignment:
Q  39 actcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatatt 100  Q
    |||||| ||| ||||| ||||||||||| |||||||| |||||| |||||| ||||| ||||    
T  48149311 actcataatagaaatacacatatcaaaatgcgtgcattcaactttttaaaagttgtcctatt 48149250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 20061212 - 20061055
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||||||||||||| || ||| ||||  |||||||||| ||||| || ||||||||   |||||| ||||||||||||| ||| |||||| | |||    
T  20061212 taacttgtgccctcaagggcacatgctaaggaactcattatagaaatatacgtatcaaaagttgtgcattcaacttcttaaaagttgacatattatgttt 20061113  T
Q  107 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagtta 162  Q
    | ||||||||| || || ||||||||||| |||||||||| | |||||| ||||||||    
T  20061112 ttcaatgcaaagttgctctttttaggttgcttaacatgtgccctaagggaacaagtta 20061055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 1705047 - 1705130
Alignment:
Q  84 ttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaaca 165  Q
    |||||| |||||||||||| ||||||||| ||||||| || ||||||||||| |||||||||| | ||||||||||||||||||    
T  1705047 ttaaaagttgtcatattgtgttttccaatccaaaattgctctttttaggttgcttaacatgtgccctaagggcacaagttaaca 1705130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 14275760 - 14275925
Alignment:
Q  8 taacttgtgccctcaaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtatttt 107  Q
    ||||||||||||  | |||| || |||||  |||||||||| ||||| || ||||||||  | ||||| ||||||||||||| ||   ||||| | ||||    
T  14275760 taacttgtgccccaagggcacatattaaggaactcattatagaaatatacgtatcaaaagtcatgcattcaacttcttaaaagttaatatattatgtttt 14275859  T
Q  108 ccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 171  Q
    ||||||||||||| || ||||| ||||| |||| ||||| ||| |||| |||||||| ||||||||    
T  14275860 ccaatgcaaaattgctctttttgggttgcttaatatgtgcctttagggaacaagttagcatgaccc 14275925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 162
Target Start/End: Complemental strand, 39420350 - 39420193
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||| | ||||||| || ||||||||  |||||||||| ||||| |||||| |||   ||||||| ||||||||| ||| ||   ||||| | |||    
T  39420350 taacttgttcgctcaagggcacatgttaaggaactcattatagaaatatacatattaaatgtcgtgcattcaacttcttgaaagttaaaatattatgttt 39420251  T
Q  107 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagtta 162  Q
    ||||||||||| || || ||||||||||  |||||||||| |||||||||||||||||    
T  39420250 tccaatgcaaagttgctctttttaggttccttaacatgtgccttaagggcacaagtta 39420193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 42184863 - 42184939
Alignment:
Q  70 gtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgtg 145  Q
    |||||| |||||||| |||| |||||||||||| ||||| ||||||||||| || |||||| |||| ||||||||||    
T  42184863 gtgcattcaacttctaaaaagttgtcatattgtgttttcaaatgcaaaattgctctttttaagttgtttaacatgtg 42184939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 2889110 - 2889192
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 89  Q
    |||||||||||||||||| || |||||||   ||| |||||||||||| |||||||||||  ||| ||| |||||||||||||    
T  2889110 taacttgtgccctcaagggcacatgttaatgaacttattataaaaatacacatatcaaaattcgtacattcaacttcttaaaa 2889192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 13242226 - 13242295
Alignment:
Q  104 ttttccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 171  Q
    |||||||||||||||||||| |||||| |||  |||||||||| | |||| |||||||||||||||||||    
T  13242226 ttttccaatgcaaaattactctttttaagttctttaacatgtgccataagtgcacaagttaacatgaccc 13242295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 168
Target Start/End: Original strand, 36528403 - 36528514
Alignment:
Q  59 tatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaacatgt-gcttaagggcac 156  Q
    ||||||||  ||||||| ||||||||||||| ||| ||| || | ||||||||||||||  | || |||||| |||| |||||||||  | ||||| |||    
T  36528403 tatcaaaagtcgtgcattcaacttcttaaaagttgacatgttatgttttccaatgcaaagctgctctttttaagttgcttaacatgtaccctaaggacac 36528502  T
Q  157 aagttaacatga 168  Q
    ||||||||||||    
T  36528503 aagttaacatga 36528514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 173
Target Start/End: Complemental strand, 44721380 - 44721342
Alignment:
Q  136 ttaacatgtgct-taagggcacaagttaacatgacccat 173  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  44721380 ttaacatgtgctctaagggcacaagttaacatgacccat 44721342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 36285005 - 36285109
Alignment:
Q  43 attataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattact-tttttaggttggttaaca 141  Q
    |||||||||||| |||||| ||||   || ||| ||||||||||||| ||   ||||| | |||| |||||||||||| || |||||| |||| ||||||    
T  36285005 attataaaaatatacatattaaaagttgtacattcaacttcttaaaagttaaaatattatttttttcaatgcaaaattgctctttttatgttgtttaaca 36285104  T
Q  142 tgtgc 146  Q
    |||||    
T  36285105 tgtgc 36285109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 31313311 - 31313450
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||||||||||||| || ||||||||  | |||||||| ||||| || ||||||||  | ||||| |||||| |||||| ||| |||||| | |||    
T  31313311 taacttgtgccctcaagggcacatgttaaggaagtcattatagaaatatacgtatcaaaagtcatgcattcaactttttaaaagttgacatattatgttt 31313410  T
Q  107 tccaatgcaaaattact-tttttaggttggttaacatgtg 145  Q
    ||||||||||| || || ||||||| ||| ||||||||||    
T  31313411 tccaatgcaaagttgctctttttagattgcttaacatgtg 31313450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 40505411 - 40505246
Alignment:
Q  8 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    ||||||||| |||||| || | ||||||||  ||||||||| |||||| | |||||||||  ||||||| ||||||||||||| ||   ||||  |||||    
T  40505411 taacttgtgtcctcaaaggtacatgttaaggaactcattatgaaaatatatatatcaaaagtcgtgcattcaacttcttaaaagttaaaatatcatattt 40505312  T
Q  107 tccaatgcaaaattac-ttttttaggttggttaacatgtgcttaagggcacaagttaacatgaccc 171  Q
    |  |||||||| ||||  |||| | |||  ||||||||||| |   ||||||||||||||||||||    
T  40505311 tttaatgcaaagttacacttttgaagttatttaacatgtgcctttaggcacaagttaacatgaccc 40505246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 38869903 - 38869942
Alignment:
Q  136 ttaacatgtgc-ttaagggcacaagttaacatgacccata 174  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  38869903 ttaacatgtgccttaagggcacaagttaacatgacccata 38869942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 6530310 - 6530476
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    |||||||||||||||||| || ||||||||  ||| |||| | ||||| |   || ||||  ||||||| ||||||||||||| |    ||||| | |||    
T  6530310 taacttgtgccctcaagggcacatgttaaggaacttattaaagaaatataagcataaaaagtcgtgcattcaacttcttaaaagtcaatatattatgttt 6530409  T
Q  107 tccaatgcaaaattact-tttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 171  Q
    ||||||||||| || || ||||| ||||| |||||||||| | | ||| ||||||||||||||||||    
T  6530410 tccaatgcaaagttgctctttttgggttgcttaacatgtgtccttaggacacaagttaacatgaccc 6530476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 5493443 - 5493362
Alignment:
Q  8 taacttgtgccctcaa-ggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaa 88  Q
    |||||||||||||||| |||| ||||||||| | |||||||| ||||| ||  |||||||  ||||||| |||||| |||||    
T  5493443 taacttgtgccctcaagggcacatgttaagaaagtcattatagaaatacacgcatcaaaagtcgtgcattcaactttttaaa 5493362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 15067673 - 15067742
Alignment:
Q  104 ttttccaatgcaaaattactt-ttttaggttggttaacatgtgc-ttaagggcacaagttaacatgaccc 171  Q
    |||||||||||||| || ||| |||||||||  ||||||||||| || | ||||||||||||||||||||    
T  15067673 ttttccaatgcaaagttgcttattttaggttccttaacatgtgcctttacggcacaagttaacatgaccc 15067742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 10960554 - 10960637
Alignment:
Q  29 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaat 112  Q
    |||||||||| ||||||||| ||||| |||||| ||||| ||||||| ||||||||||| | |||| ||||||| |||||||||    
T  10960554 atgttaagatcctcattatagaaatacacatattaaaaaacgtgcattcaacttcttaatagttgttatattgtgttttccaat 10960637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 171
Target Start/End: Original strand, 154333 - 154369
Alignment:
Q  136 ttaacatgtg-cttaagggcacaagttaacatgaccc 171  Q
    |||||||||| ||||||||||||||||||||||||||    
T  154333 ttaacatgtgtcttaagggcacaagttaacatgaccc 154369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 37919184 - 37919299
Alignment:
Q  29 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattactttttt 128  Q
    ||||||||| |||||||||| ||||| || |||||||||  |||||| ||||||||||||| ||| |||||| | |||||||||| ||| ||  | ||||    
T  37919184 atgttaagaaactcattatataaatatacgtatcaaaaattgtgcattcaacttcttaaaagttgacatattatgttttccaatgtaaagttgttctttt 37919283  T
Q  129 aggttggttaacatgt 144  Q
    | |||| |||||||||    
T  37919284 atgttgcttaacatgt 37919299  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 178
Target Start/End: Complemental strand, 54787922 - 54787783
Alignment:
Q  41 tcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaatta-cttttttaggttggttaa 139  Q
    |||||||||||||| |||||||||||| ||| ||| |||| |||||||| ||   || || |||||| ||||| ||| ||| ||||||||||||  |||     
T  54787922 tcattataaaaatatacatatcaaaaatcgtacattcaacatcttaaaagttaaaatgttatatttttcaatgaaaagttatcttttttaggttccttat 54787823  T
Q  140 catgtg-cttaagggcacaagttaacatgacccatatttt 178  Q
    |||||| ||||||| |||||||||||||| ||| ||||||    
T  54787822 catgtgccttaaggacacaagttaacatgtcccttatttt 54787783  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 141
Target Start/End: Complemental strand, 48192702 - 48192590
Alignment:
Q  29 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaattactttttt 128  Q
    ||||||||| ||| |||||| ||||| || ||| ||||| || |||| ||||||||||||| ||| |||||| | ||||| | ||||||||| |||||||    
T  48192702 atgttaagaaacttattatagaaatatacttattaaaaatcgcgcattcaacttcttaaaagttgacatattatgttttcaattgcaaaattgctttttt 48192603  T
Q  129 aggttggttaaca 141  Q
    || ||| ||||||    
T  48192602 agattgcttaaca 48192590  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 4539875 - 4539942
Alignment:
Q  22 aaggcagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 89  Q
    |||||| ||||||||| |||||||||||||||| |  ||| ||||| ||||||  |||||||||||||    
T  4539875 aaggcacatgttaagaaactcattataaaaatatatgtattaaaaatcgtgcaatcaacttcttaaaa 4539942  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 13637916 - 13638059
Alignment:
Q  29 atgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattttccaatgcaaaatt-acttttt 127  Q
    ||||||||| | |||||||||||||| ||  |||||||  ||||||| ||| ||||||||||||   || || | |||||||| | ||||||   |||||    
T  13637916 atgttaagaaagtcattataaaaatatacgcatcaaaattcgtgcattcaaattcttaaaaattaaaatgttatgttttccaacgtaaaattgttttttt 13638015  T
Q  128 taggttggttaacatgtg-cttaagggcacaagttaacatgacc 170  Q
    ||||||  |||||||||| | | |||| ||||||||||||||||    
T  13638016 taggttctttaacatgtgccctcagggtacaagttaacatgacc 13638059  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 33791483 - 33791652
Alignment:
Q  8 taacttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaaattgtcatattgtattt 106  Q
    ||||||||| |||||| | || ||||||||  | ||||| |||||||| || |||||||   ||| ||| |||||| |||||| ||   ||||| | |||    
T  33791483 taacttgtgtcctcaacgacatatgttaaggaattcattgtaaaaatatacgtatcaaatgtcgtacattcaactttttaaaagttaaaatattatgttt 33791582  T
Q  107 tccaatgcaaaattact-tttttaggttggttaacatgtgc-ttaagggcacaagttaacatgacccata 174  Q
    ||||||| ||| ||||| ||||| | ||  ||||||| ||| || |||||||||||||||||||||||||    
T  33791583 tccaatgtaaagttactctttttcgattctttaacatatgcctttagggcacaagttaacatgacccata 33791652  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 171
Target Start/End: Complemental strand, 24355484 - 24355448
Alignment:
Q  136 ttaacatgtgc-ttaagggcacaagttaacatgaccc 171  Q
    ||||||||||| |||||||||||||||||||||||||    
T  24355484 ttaacatgtgccttaagggcacaagttaacatgaccc 24355448  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 174
Target Start/End: Original strand, 28945977 - 28946005
Alignment:
Q  146 cttaagggcacaagttaacatgacccata 174  Q
    |||||||||||||||||||||||||||||    
T  28945977 cttaagggcacaagttaacatgacccata 28946005  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 41144735 - 41144656
Alignment:
Q  11 cttgtgccctcaagg-cagatgttaagatactcattataaaaatagacatatcaaaaagcgtgcatccaacttcttaaaa 89  Q
    |||||| |||||||| || ||||||||  |||||||||| ||||| |||||||||||  ||||||| |||||| ||||||    
T  41144735 cttgtgtcctcaagggcacatgttaaggaactcattatagaaatatacatatcaaaagtcgtgcattcaactttttaaaa 41144656  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 29429729 - 29429777
Alignment:
Q  125 ttttaggttggttaacatgtgct-taagggcacaagttaacatgaccca 172  Q
    |||| ||||| |||||||||||  |||||||||||||||||||||||||    
T  29429729 ttttgggttgcttaacatgtgccctaagggcacaagttaacatgaccca 29429777  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 175
Target Start/End: Complemental strand, 42655932 - 42655892
Alignment:
Q  136 ttaacatgtg-cttaagggcacaagttaacatgacccatat 175  Q
    |||||||||| ||||||||||||||||||||||||| ||||    
T  42655932 ttaacatgtgtcttaagggcacaagttaacatgacctatat 42655892  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 214277 - 214370
Alignment:
Q  80 cttcttaaaaattgtcatattgtattttccaatgcaaaattac-ttttttaggttggttaacatgtg-cttaagggcacaagttaacatgaccc 171  Q
    ||||||||||||||  ||||| |||||| |||| ||||||| | |||||||| ||| |||||||||| | |||| |||||| ||||||| ||||    
T  214277 cttcttaaaaattgatatattatatttttcaatacaaaattgctttttttagattgtttaacatgtgccataagagcacaaattaacataaccc 214370  T

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