View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2623_low_9 (Length: 243)
Name: NF2623_low_9
Description: NF2623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2623_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 7907176 - 7906953
Alignment:
| Q |
5 |
aaatcagactagatacatgaaacttaaa-gagctaagagctcgt----acgatcaggaatcagaatttcgcaccttgcaaagacatcattttgtcttcca |
99 |
Q |
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| T |
7907176 |
aaatcagactagatacatgaaacttaaaagagataagagctcattcatacgatcaggaatcagaatttcgcaccttgcaaagacatcattttgtcttcca |
7907077 |
T |
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| Q |
100 |
agtaagctacttcgatcaagaggcatatccgcagttgttccatagctcatgaaactaggaatcggaatttgataccttgcaaacaatcatttggctttcc |
199 |
Q |
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| T |
7907076 |
agtaagctacttcgaccaagaggcatatcagcagttgttccatagctcatgaaactaggaatcggaatttgataccttgcaaacactcatttggctttcc |
7906977 |
T |
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| Q |
200 |
tagtaagctacttcgaccaagagg |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
7906976 |
tagtaagctacttcgaccaagagg |
7906953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 7896777 - 7896556
Alignment:
| Q |
3 |
ataaatcagactagatacatgaaacttaaagagctaagagctcgtacgatcaggaatcagaatttcgcaccttgcaaagacatcattttgtcttccaagt |
102 |
Q |
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| T |
7896777 |
ataaatcagactagatacatgaaacttagagagctaagagctcataagttcaggaatcagaatttcgcaccttgcaaagacatcatttggtcttccatgt |
7896678 |
T |
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| Q |
103 |
aagctacttcgatcaagaggcatatccgcagttgttccatagctcatgaaactaggaatcggaatttgataccttgcaaaca-atcatttggctttccta |
201 |
Q |
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| T |
7896677 |
aagctacttcgaccaagaggcatatcaacagttgttccatagctaatgaaacccggaaacggaatttgacaccttgcgaagacatcatttggctttccca |
7896578 |
T |
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| Q |
202 |
gtaagctacttcgaccaagagg |
223 |
Q |
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| T |
7896577 |
gtaagctacttcgaccaagagg |
7896556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 7896608 - 7896442
Alignment:
| Q |
70 |
caccttgcaaagacatcattttgtcttccaagtaagctacttcgatcaagaggcatatccgcag------------ttgttccatagctcatgaaactag |
157 |
Q |
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|||||||| |||||||||||| | |||| ||||||||||||||| ||||||||||||| |||| |||||||| ||||||| | || || |
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| T |
7896608 |
caccttgcgaagacatcatttggctttcccagtaagctacttcgaccaagaggcatatcagcaggagtaaccaaatttgttccagagctcataagaccag |
7896509 |
T |
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| Q |
158 |
gaatcggaatttgataccttgcaaaca-atcatttggctttcctagtaagctacttcgaccaagagg |
223 |
Q |
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| T |
7896508 |
gacttggaattttgcaccttgcaaagacatcatttggttttcctagtaagctactttgtccaagagg |
7896442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 7896502 - 7896453
Alignment:
| Q |
62 |
gaatttcgcaccttgcaaagacatcattttgtcttccaagtaagctactt |
111 |
Q |
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|||||| |||||||||||||||||||||| || |||| |||||||||||| |
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| T |
7896502 |
gaattttgcaccttgcaaagacatcatttggttttcctagtaagctactt |
7896453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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